6NOD

Crystal structure of C. elegans PUF-8 in complex with RNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.547 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.229 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Engineering a conserved RNA regulatory protein repurposes its biological functionin vivo.

Bhat, V.D.McCann, K.L.Wang, Y.Fonseca, D.R.Shukla, T.Alexander, J.C.Qiu, C.Wickens, M.Lo, T.W.Tanaka Hall, T.M.Campbell, Z.T.

(2019) Elife 8: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
PUF (Pumilio/FBF) domain-containing
A, B, C
356Caenorhabditis elegansMutation(s): 0 
Gene Names: puf-8
Find proteins for Q09487 (Caenorhabditis elegans)
Go to UniProtKB:  Q09487
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(P*UP*GP*UP*AP*UP*AP*UP*A)-3')D,E,F8Caenorhabditis elegans
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.547 Å
  • R-Value Free: 0.285 
  • R-Value Work: 0.229 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 109.182α = 90.00
b = 189.024β = 103.61
c = 63.156γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
HKL-2000data reduction
PHENIXrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-01-30
    Type: Initial release