6MT6

Crystal Structure of HLA-B*37:01 in complex with NP338 influenza peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.31 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Broad CD8+T cell cross-recognition of distinct influenza A strains in humans.

Grant, E.J.Josephs, T.M.Loh, L.Clemens, E.B.Sant, S.Bharadwaj, M.Chen, W.Rossjohn, J.Gras, S.Kedzierska, K.

(2018) Nat Commun 9: 5427-5427

  • DOI: 10.1038/s41467-018-07815-5
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Newly-emerged and vaccine-mismatched influenza A viruses (IAVs) result in a rapid global spread of the virus due to minimal antibody-mediated immunity. In that case, established CD8 <sup>+ </sup> T-cells can reduce disease severity. However, as mutat ...

    Newly-emerged and vaccine-mismatched influenza A viruses (IAVs) result in a rapid global spread of the virus due to minimal antibody-mediated immunity. In that case, established CD8 + T-cells can reduce disease severity. However, as mutations occur sporadically within immunogenic IAV-derived T-cell peptides, understanding of T-cell receptor (TCRαβ) cross-reactivity towards IAV variants is needed for a vaccine design. Here, we investigate TCRαβ cross-strain recognition across IAV variants within two immunodominant human IAV-specific CD8 + T-cell epitopes, HLA-B*37:01-restricted NP 338-346 (B37-NP 338 ) and HLA-A*01:01-restricted NP 44-52 (A1-NP 44 ). We find high abundance of cross-reactive TCRαβ clonotypes recognizing distinct IAV variants. Structures of the wild-type and variant peptides revealed preserved conformation of the bound peptides. Structures of a cross-reactive TCR-HLA-B37-NP 338 complex suggest that the conserved conformation of the variants underpins TCR cross-reactivity. Overall, cross-reactive CD8 + T-cell responses, underpinned by conserved epitope structure, facilitates recognition of distinct IAV variants, thus CD8 + T-cell-targeted vaccines could provide protection across different IAV strains.


    Organizational Affiliation

    School of Life Sciences, KNU Creative BioResearch Group, Kyungpook National University, Daegu 41566, Republic of Korea.,Structural Biology Unit, Institute of Molecular Biology of Barcelona, Consejo Superior de Investigaciones Científicas, E-08028 Barcelona, Spain.,Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom.,Japan Science and Technology Agency (JST), Precursory Research for Embryonic Science and Technology (PRESTO), Saitama, Japan.,Ministry of Education Key Laboratory of Protein Science, School of Life Sciences, Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, Tsinghua University, Beijing, 100084, China. maojunyang@tsinghua.edu.cn.,Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9039, USA.,Sanofi-Aventis Pharma Deutschland GmbH, Frankfurt am Main, Germany.,College of Pharmacy, Oregon State University , Corvallis, Oregon 97331, United States.,Department of Biotechnology and Food Engineering, Technion-Israel Institute of Technology, Haifa, Israel afishman@tx.technion.ac.il.,Department of Integrative Structural Biology, Institute of Genetics and of Molecular and Cellular Biology, Centre National de la Recherche Scientifique, Institut National de la Santé de la Recherche Médicale, Université de Strasbourg, 1 rue Laurent Fries, Illkirch, 67404, France.,Department of Biochemistry and Molecular Biology, Monash University, Clayton, Melbourne, VIC, Australia.,Department of Molecular and Cellular Physiology, Stanford University, Stanford, United States.,Institute for Molecular Science, National Institutes of Natural Sciences, 444-8787, Okazaki, Aichi, Japan. aki-naka@ims.ac.jp.,Experimental Therapeutics Centre, Agency for Science, Technology and Research (A(∗)STAR), 31 Biopolis way, Nanos, #03-01, Singapore 138669, Singapore. Electronic address: cbkang@etc.a-star.edu.sg.,I2BC, SB2SM, CNRS UMR 9198, CEA Saclay, 91191, Gif-sur-Yvette, France.,ACRF Chemical Biology Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3010, Australia.,Charles River , Chesterford Research Park , Saffron Walden CB10 1XL , U.K.,Internal Medicine D, Department of Nephrology, Hypertension and Rheumatology, University Hospital Münster, D-48149 Münster, Germany, and.,Department of Cellular and Molecular Medicine, Chosun University School of Medicine, Gwangju, 61452, Republic of Korea. Sunglee@chosun.ac.kr.,EMBL, CS 90181, 71 AV des Martyrs, 38009, Grenoble (38), France.,Cleveland Center for Membrane and Structural Biology, Case Western Reserve University, 1819 East 101st Street, Cleveland, OH 44106, USA.,Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, Texas 75390-8816, USA.,Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Alexandria University, Alexandria, 21521, Egypt; Department of Analytical & Pharmaceutical Chemistry, Faculty of Pharmacy & Drug Manufacturing, Pharos University in Alexandria, Egypt.,Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.; Department of Anatomy, University of California San Francisco, San Francisco, CA 94143, USA.,Centre for Biological Sciences and Institute for Life Sciences, University of Southampton, Highfield Campus, Southampton SO17 1BJ, UK.,School of Physical Sciences & Computing, Division of Chemistry, University of Central Lancashire, Preston PR1 2HE, United Kingdom; School of Chemistry, University of Leeds, Leeds, LS2 9JT, United Kingdom.,Department of Biochemistry, University of Toronto, Toronto, ON M5S 1A8, Canada.,Experimental Therapeutics Centre, Agency for Science, Technology and Research (A(∗)STAR), 31 Biopolis way, Nanos, #03-01, Singapore 138669, Singapore.,Department of Anatomy, University of California San Francisco, San Francisco, CA 94143, USA.,CryoEM and Bioimaging Division, SSRL, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA, 94025, USA.,Anesthesiology, Shanghai First Maternity and Infant Hospital, Tongji University school of Medicine, Shanghai, 201203, China.,Department of Chemistry, Princeton University, Princeton, NJ 08544.,Department of Chemistry and Biochemistry , University of Bern , Freiestrasse 3 , 3012 Bern , Switzerland.,International AIDS Vaccine Initiative Neutralizing Antibody Center and the Collaboration for AIDS Vaccine Discovery, The Scripps Research Institute, La Jolla, CA 92037, USA.,Department of Biochemistry & Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece. Electronic address: ddleonidas@bio.uth.gr.,State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, China.,From the Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge CB2 1QP and.,Department of Biochemistry, University of Oxford, Oxford, United Kingdom.,Protein Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, 14195 Berlin, Germany; BioSupraMol Core Facility, Freie Universität Berlin, 14195 Berlin, Germany.,Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.,Laboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.,Department of Pharmacology, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC, USA.,Department of Biochemistry & Biotechnology, University of Thessaly, Biopolis, 41500 Larissa, Greece.,Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, VIC, Australia. ilia.voskoboinik@petermac.org.,Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544.,State Key Laboratory of Biotherapy/Collaborative Innovation Center of Biotherapy, West China Hospital, Sichuan University, Chengdu, China.,Molecular Medicine Program, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada.,Département de Biochimie, de Microbiologie et de Bio-Informatique, IBIS et PROTEO, Université Laval, Pavillon Charles-Eugène Marchand, Québec, Canada.,Scripps Center for HIV/AIDS Vaccine Immunology & Immunogen Discovery, The Scripps Research Institute, La Jolla, CA 92037, USA.,Dipartimento di Bioscienze, Università di Milano, Via Celoria 26, I-20133 Milano, Italy.,ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, VIC, 3800, Australia. stephanie.gras@monash.edu.,Biotechnology Research Centre, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.,Institute of Infection and Immunity, School of Medicine, Cardiff University, Cardiff, CF14 4XN, UK.,Department of Pharmacy, University of Pisa, 56126 Pisa, Italy. tiziano.marzo@unipi.it.,Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, 3800, Australia.,Ion Mobility-Mass Spectrometry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, 14195 Berlin, Germany; Department of Molecular Physics, Fritz Haber Institute of the Max Planck Society, 14195 Berlin, Germany.,Shandong Asia-pacific Highharve Organisms Science and Technology, CO., LTD, China.,National Pesticide Engineering Research Center, College of Chemistry, Nankai University, Tianjin 300071, China.,Protein Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, 14195 Berlin, Germany.,Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.,MRC Laboratory of Molecular Biology, Cambridge, UK.,Janelia Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, VA, 20147, USA.,National Center for Protein Science Shanghai , Shanghai, China.,Department of Chemical Sciences, University of Naples Federico II, 80126 Napoli, Italy. giarita.ferraro@gmail.com.,CHDI Management/CHDI Foundation , 6080 Center Drive , Los Angeles , California 90045 , United States.,Department of Pharmacology and Toxicology, Faculty of Medicine and Medical Centre, American University of Beirut, Beirut, Lebanon.,Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.,Dipartimento di Bioscienze, Università di Milano, Via Celoria 26, I-20133 Milano, Italy; CNR-IBF, Istituto di Biofisica, Via Celoria 26, I-20133 Milano, Italy.,Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA, 91125, USA.,Axe Molecular Endocrinology and Nephrology, CHU de Québec Research Center, Department of Molecular Medicine, Laval University, Québec, Canada.,University of Chinese Academy of Sciences, Yuquan Rd, Shijingshan District, Beijing, 100049, China.,Dipartimento di Bioscienze, Università di Milano, Via Celoria 26, I-20133 Milano, Italy; Centro di Ricerca Pediatrica R.E. Invernizzi, Università di Milano, Via Celoria 26, I-20133 Milano, Italy.,Research Faculty of Agriculture, Hokkaido University, Kita-9 Nishi-9, Kita-ku, Sapporo, 060-8589, Japan. Electronic address: kimura@abs.agr.hokudai.ac.jp.,Molecular Biology Institute, University of California, Los Angeles, CA, USA.,Institute for Biochemistry, Albert-Ludwigs-University Freiburg, Albertstrasse 21, 79104, Freiburg, Germany. einsle@biochemie.uni-freiburg.de.,State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, China. Electronic address: xu_sujuan@sdu.edu.cn.,Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.,Molecular and Structural Biology Division, CSIR-Central Drug Research Institute, Lucknow 226031, India ashish_arora@cdri.res.in.,Structural Biology Unit, Institució Catalana de Recerca i Estudis Avançats, E-08003 Barcelona, Spain.,Lee Kong Chian School of Medicine, Nanyang Technological University, EMB 03-07, 59 Nanyang Drive, Singapore 636921, Singapore; NTU Institute of Structural Biology, Nanyang Technological University, EMB 06-01, 59 Nanyang Drive, Singapore 636921, Singapore.,GlaxoSmithKline, 1250 South Collegeville Road, Collegeville, PA 19426, USA.,Department of Microbiology and Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, 3010, Australia.,Institute for Biochemistry, Albert-Ludwigs-University Freiburg, Albertstrasse 21, 79104, Freiburg, Germany.,Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.,Department of Biochemistry, University of Utah School of Medicine, Salt Lake City, United States.,Department of Organic Chemistry, University of Debrecen, POB 400, H-4002 Debrecen, Hungary.,Key Laboratory of RNA Biology, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China; State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China. Electronic address: ylwang@ibp.ac.cn.,Department of Chemistry, University of Washington, 4000 15th Ave NE, Bagley Hall, Seattle, WA, 98195-1700, USA.,State Key Laboratory of Bioreactor Engineering, Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science & Technology, Shanghai, China.,Department of Chemical Sciences, University of Naples Federico II, 80126 Napoli, Italy. antonello.merlino@unina.it.,From the Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom.,Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Alexandria University, Alexandria, 21521, Egypt.,Cancer Cell Death Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.,Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.,Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.,College of Veterinary Medicine and Biomedical Sciences, Colorado State University, Fort Collins, Colorado, USA.,From the Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom, bsssb@bath.ac.uk.,National Center for Protein Science Shanghai, State Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 201210, China.,Killer Cell Biology Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia. amelia.brennan@petermac.org.,Department of Crystallography and Structural Biology, Instituto de Química-Física "Rocasolano," Consejo Superior de Investigaciones Científicas, E-28006 Madrid, Spain; xjuan@iqfr.csic.es mobashery@nd.edu.,Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India. Electronic address: scbihani@barc.gov.in.,Research Complex at Harwell, Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom.,York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington YO10 5DD, United Kingdom.,School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia.,Department of Crystallography/Biological Sciences, Institute of Structural and Molecular Biology, Birkbeck College, London, UK.,Research Faculty of Agriculture, Hokkaido University, Kita-9 Nishi-9, Kita-ku, Sapporo, 060-8589, Japan.,Department of Functional Molecular Science, SOKENDAI (The Graduate University for Advanced Studies), Hayama, 240-0193, Japan. aki-naka@ims.ac.jp.,Department of Integrative Structural Biology, Institute of Genetics and of Molecular and Cellular Biology, Centre National de la Recherche Scientifique, Institut National de la Santé de la Recherche Médicale, Université de Strasbourg, 1 rue Laurent Fries, Illkirch, 67404, France. rochel@igbmc.fr.,Departments of Bioengineering, and of Microbiology and Immunology, and James H. Clark Center, Stanford University, Stanford, CA, 94305, USA. wahc@stanford.edu.,National Center for Protein Science Shanghai, State Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 201210, China; Shanghai Science Research Center, Chinese Academy of Sciences, Shanghai 201210, China. Electronic address: cong@sibcb.ac.cn.,Department of Orthopaedic Surgery, University of California, Los Angeles, CA, USA.,Sir Peter MacCallum Department of Oncology, University of Melbourne, Melbourne, VIC, Australia.,Shoolini University of Biotechnology and Management Sciences, Himachal Pradesh, India.,Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China. Liyang@simm.ac.cn.,GlaxoSmithKline, 5 Moore Drive, P.O. Box 13398, Research Triangle Park, NC 27709, USA.,Institute for Molecular Science, National Institutes of Natural Sciences, 444-8787, Okazaki, Aichi, Japan.,Institute for Photonics and Advanced Sensing, The School of Biological Sciences, The University of Adelaide, North Tce, Adelaide, South Australia, 5005, Australia.,Department of Pharmaceutical Sciences, University of Tennessee Health Science Center, Memphis, TN, 38163, United States.,Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001 Rehovot, Israel; dan.tawfik@weizmann.ac.il Bar-Even@mpimp-golm.mpg.de.,School of Physical Sciences & Computing, Division of Chemistry, University of Central Lancashire, Preston PR1 2HE, United Kingdom. Electronic address: jhayes@uclan.ac.uk.,Molecular Medicine Program, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada; john.rubinstein@utoronto.ca.,Sinovac Biotech Co., Ltd, Beijing, China.,Leeds Institute of Cancer and Pathology, University of Leeds, Leeds LS9 7TF, United Kingdom.,the Cambridge Institute for Medical Research, University of Cambridge, Wellcome Trust/MRC Building, Cambridge CB2 0XY, United Kingdom.,Institute of Biomedicine, Department of Medical Biochemistry and Cell Biology, The Sahlgrenska Academy, University of Gothenburg, 40530 Göteborg, Sweden.,Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.,Department of Physiology, University of Texas Southwestern Medical Center, Dallas, Texas 75390-9040, USA.,Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, VIC, 3800, Australia. stephanie.gras@monash.edu.,Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Kafrelsheikh University, Kafr El-Sheikh, 33516, Egypt.,CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China; Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China; Qingdao Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China. Electronic address: fengyg@qibebt.ac.cn.,Department of Biophysics, The Health Science Center, Peking University, Beijing, 100191, China. Electronic address: rswei@hsc.pku.edu.cn.,Department of Material Science, Graduate School of Science, Osaka City University Sugimoto, Sumiyoshi-ku, Osaka, 558-8585, Japan.,Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556; xjuan@iqfr.csic.es mobashery@nd.edu.,National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing , China. raozh@tsinghua.edu.cn.,Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.,Department of Biological Sciences, Purdue University, West Lafayette, IN, USA.,Killer Cell Biology Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia.,Department of Biophysics, The Health Science Center, Peking University, Beijing, 100191, China. Electronic address: zhusujie87@126.com.,Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, 3012, Bern, Switzerland.,Department of Structural Biology, Stanford University, Stanford, United States.,Department of Chemistry and Key Laboratory of Organic Optoelectronics and Molecular Engineering of the Ministry of Education, Tsinghua University, Beijing, 100084, China.,CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China; Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China; Qingdao Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China.,HIT Center for Life Sciences, School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, 150080, China.,Institute of Bioinformatics and Applied Biotechnology, Bangalore, India.,Dipartimento di Bioscienze, Università di Milano, Via Celoria 26, I-20133 Milano, Italy; CNR-IBF, Istituto di Biofisica, Via Celoria 26, I-20133 Milano, Italy. Electronic address: mario.milani@unimi.it.,Japan Agency for Medical Research and Development (AMED), Core Research for Evolutional Science and Technology (CREST), Kyoto, Japan.,From the Department of Pathology, University of Cambridge, Tennis Court Road, Cambridge CB2 1QP and scg34@cam.ac.uk.,Department of Molecular Pharmacology and Cell Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP), 13125 Berlin, Germany.,State Key Laboratory of Microbial Metabolism, School of Life Sciences & Biotechnology, Shanghai Jiao Tong University , Shanghai, China.,Department of Chemistry, University of Florence, 50019 Sesto Fiorentino (FI), Italy. luigi.messori@unifi.it.,Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Alexandria University, Alexandria, 21521, Egypt. Electronic address: ahmed.belal@alexu.edu.eg.,Lee Kong Chian School of Medicine, Nanyang Technological University, EMB 03-07, 59 Nanyang Drive, Singapore 636921, Singapore; NTU Institute of Structural Biology, Nanyang Technological University, EMB 06-01, 59 Nanyang Drive, Singapore 636921, Singapore. Electronic address: luodahai@ntu.edu.sg.,Department of Medical Biophysics, University of Toronto, Toronto, ON M5G 1L7, Canada.,Ministry of Education Key Laboratory of Protein Science, School of Life Sciences, Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, Tsinghua University, Beijing, 100084, China. gaon@pku.edu.cn.,Department of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.,Synchrotron Radiation Research Section of Macromolecular Crystallography Laboratory, National Cancer Institute, South Cass Avenue 9700, Argonne, IL 60439, U.S.A. bartosz.sekula@nih.gov.,Department of Chemical Sciences, University of Naples Federico II, 80126 Napoli, Italy. ruffo@unina.it.,Department of Biochemistry and Genetics, La Trobe Institute of Molecular Science, La Trobe University, Bundoora, 3084, VIC, Australia.,Department of Molecular Biology, Princeton University, Princeton, NJ 08544.,HIT Center for Life Sciences, School of Life Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang, 150080, China. huangzhiwei@hit.edu.cn.,National Center for Protein Science Shanghai, State Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 201210, China; Shanghai Science Research Center, Chinese Academy of Sciences, Shanghai 201210, China.,Department of Quantitative Biology and Medicine, Research Center for Advanced Science and Technology, University of Tokyo, Tokyo, Japan.,Institute for Quantitative Biosciences, The University of Tokyo, 113-0032 Tokyo, Japan.,Department of Cell and Molecular Biology, Biomedical Centre, Uppsala University, 75124 Uppsala, Sweden.,Department of Biomolecular Sciences, Weizmann Institute of Science, 7610001 Rehovot, Israel.,Research Faculty of Agriculture, Hokkaido University, Kita-9 Nishi-9, Kita-ku, Sapporo, 060-8589, Japan. Electronic address: okuyama@abs.agr.hokudai.ac.jp.,Australian Infectious Diseases Research Centre, The University of Queensland, Brisbane, QLD 4072, Australia.,Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, Okayama, 700-8530, Japan. shen@cc.okayama-u.ac.jp.,Department of Microbiology, The Fourth Military Medical University, Xian, Shanxi, China.,Department of Immunology, Juntendo University School of Medicine, Tokyo, 113-8421, Japan.,Enamine, Kiev, Ukraine.,Faculty of Science, Ibaraki University, Mito, Japan.,The ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Melbourne, VIC, Australia.,CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China; Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China; Qingdao Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, China; University of Chinese Academy of Sciences, Beijing, 100049, China.,School of Biological Sciences, The University of Adelaide, Adelaide, South Australia, 5005, Australia.,National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing , China. xiangxi@ibp.ac.cn.,CryoEM and Bioimaging Division, SSRL, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA, 94025, USA. wahc@stanford.edu.,Department of Pharmaceutical Sciences, University of Tennessee Health Science Center, Memphis, TN, 38163, United States. wli@uthsc.edu.,Department of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, India.,Institute for Molecular Science, National Institutes of Natural Sciences, 444-8787, Okazaki, Aichi, Japan. iino@ims.ac.jp.,Louis V. Gerstner Jr. Graduate School of Biomedical Sciences, Memorial Sloan Kettering Cancer Center, New York, United States.,Molecular Biology Division, Bhabha Atomic Research Centre, Mumbai 400085, India; Homi Bhabha National Institute, Anushakti Nagar, Mumbai 400094, India.,Faculty of Advance Life Science, Hokkaido University, Kita-10 Nishi-8, Kita-ku, Sapporo, 060-0810, Japan.,Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA.,Molecular Biology Division, Bhabha Atomic Research Centre, Mumbai 400085, India; Homi Bhabha National Institute, Anushakti Nagar, Mumbai 400094, India. Electronic address: aballal@barc.gov.in.,Department of Biotechnology and Food Engineering, Technion-Israel Institute of Technology, Haifa, Israel.,Nurix, Inc, 1700 Owens Street, Suite 205, San Francisco, CA, 94158, USA.,National Center for Protein Science Shanghai, State Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai 201210, China; Center for Precision Medicine Multi-Omics Research, Peking University Health Science Center; State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China.,National Taras Shevchenko University of Kiev, Kiev, Ukraine.,Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.,Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania 15260.,Department of Pharmacology and Toxicology, Faculty of Medicine and Medical Centre, American University of Beirut, Beirut, Lebanon; Department of Pharmacology and Toxicology, Faculty of Pharmacy, Alexandria University, Alexandria, 21521, Egypt. Electronic address: ae88@aub.edu.lb.,Pathology and Laboratory Medicine Service, VA Medical Center at Birmingham, Birmingham, AL, 35294, United States.,Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.,Molecular Genetics, Institute of Life Science, Kurume University, Fukuoka, Japan.,ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, VIC, 3800, Australia.,Department of Cell Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan. s.iwata@mfour.med.kyoto-u.ac.jp.,Department of Chemistry, Texas A&M University , College Station, Texas 77843, United States.,Department of Organic Chemistry, University of Debrecen, POB 400, H-4002 Debrecen, Hungary. Electronic address: somsak.laszlo@science.unideb.hu.,Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, Okayama, 700-8530, Japan.,Dipartimento di Bioscienze, Università di Milano, Via Celoria 26, I-20133 Milano, Italy. Electronic address: giovanni.bertoni@unimi.it.,Department of Chemistry, University of Turku, Joint Biotechnology Laboratory, Arcanum, 20500 Turku, Finland; anton.zavialov@utu.fi.,Department of Neurology and Neurological Sciences, Stanford University, Stanford, United States.,Technion Center for Structural Biology, Lorry I. Lokey Center for Life Sciences and Engineering, Technion-Israel Institute of Technology, Haifa, Israel.,Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA. bshoichet@gmail.com.,Synchrotron Radiation Research Section of Macromolecular Crystallography Laboratory, National Cancer Institute, South Cass Avenue 9700, Argonne, IL 60439, U.S.A.,Howard Hughes Medical Institute, University of California, Los Angeles, CA 90095, USA.,Department of Biochemistry and Molecular Biology, and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia.,Department of Biology, University of York, York, United Kingdom.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.,Structural Biology Program, Memorial Sloan Kettering Cancer Center, New York, United States.,Department of Biophysics, The Health Science Center, Peking University, Beijing, 100191, China; Electron Microscopy Analysis Laboratory, The Health Science Center, Peking University, Beijing, 100191, China; Center for Protein Science, Peking University, Beijing, 100871, China. Electronic address: ccyin@hsc.pku.edu.cn.,Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka, Japan.,Institute of Molecular Biology and Biophysics, ETH Zurich, Swiss Federal Institute of Technology, 8093 Zurich, Switzerland.,Key Laboratory of RNA Biology, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.,Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.; Department of Molecular and Cellular Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA.,Department of Biochemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zürich, Switzerland.,Department of Microbiology and Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, 3010, Australia. kkedz@unimelb.edu.au.,BIOSS Centre for Biological Signalling Studies, Schänzlestr. 1, 79104, Freiburg, Germany. einsle@biochemie.uni-freiburg.de.,School of Molecular Sciences, University of Western Australia, Perth, WA, 6009, Australia.,Department of Dermatology, Comprehensive Cancer Center, Cancer Chemoprevention Program, University of Alabama at Birmingham, Birmingham, AL, 35294, United States.,Stanley Center for Psychiatric Research , Broad Institute of the Massachusetts Institute of Technology and Harvard University , 75 Ames Street , Cambridge , Massachusetts 02142 , United States.,Molecular and Structural Biology Division, CSIR-Central Drug Research Institute, Lucknow 226031, India.,Lee Kong Chian School of Medicine, Nanyang Technological University, EMB 03-07, 59 Nanyang Drive, Singapore 636921, Singapore; NTU Institute of Structural Biology, Nanyang Technological University, EMB 06-01, 59 Nanyang Drive, Singapore 636921, Singapore; School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 636921, Singapore.,Health and Life Sciences, De Montfort University, Gateway House, Leicester, LE1 9BH, United Kingdom.,X-ray Crystallography Facility, National Institute of Immunology, New Delhi 110067, India.,Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, No. 20, Nanxincun, Xiangshan, Beijing, 100093, China. shen@cc.okayama-u.ac.jp.,Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544; ajlink@princeton.edu.,Department of Biophysics, Zhejiang University School of Medicine, Hangzhou 310058, China.,Department of Chemistry, University of Basel, BPR 1096, Mattenstrasse 24a, 4058 Basel, Switzerland.,Program in Viruses and Emerging Pathogens, Infectious Diseases Institute; Center for Retrovirus Research, Department of Veterinary Biosciences, Microbial Infection and Immunity, and Microbiology, Ohio State University, Columbus, OH, USA.,MRC Laboratory of Molecular Biology, Cambridge, UK. dbarford@mrc-lmb.cam.ac.uk.,Department of Cellular and Molecular Medicine, Chosun University School of Medicine, Gwangju, 61452, Republic of Korea.,Department of Biology, Technion-Israel Institute of Technology, 32000 Haifa, Israel.,Department of Functional Molecular Science, SOKENDAI (The Graduate University for Advanced Studies), Hayama, 240-0193, Japan. iino@ims.ac.jp.,RIKEN, SPring-8 Center, Hyogo, Japan. s.iwata@mfour.med.kyoto-u.ac.jp.,Department of Veterans Affairs Medical Center, Memphis, TN, 38104, United States.,Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA. jir322@gmail.com.,Clean Energy Research Center, Korea Institute of Science and Technology (KIST), Seoul 02792, Republic of Korea.,Instituto de Biomedicina de Valencia (IBV-CSIC), Valencia, Spain.,Department of Chemistry, University of Turku, Joint Biotechnology Laboratory, Arcanum, 20500 Turku, Finland.,Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA. suzanne.jackowski@stjude.org.,Departments of Physiology and Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, CA 90095, USA.,State Key Laboratory of Microbial Technology, Shandong University, Jinan 250100, China. Electronic address: sdsd620620@163.com.,KNU Institute for Microorganisms, Kyungpook National University, Daegu 41566, Republic of Korea.,Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.,State Key Laboratory and Institute of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.,Department of Chemistry, University of Pennsylvania, Philadelphia, PA, 19104, United States.,Center for Biological Resources and Informatics, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.,RIKEN, SPring-8 Center, Hyogo, Japan.,Department of Organic Chemistry, Faculty of Chemistry, University of Łódź, Tamka 12, 91-403, Poland.,Gavin Herbert Eye Institute and the Department of Ophthalmology, University of California, Irvine, 829 Health Sciences Road, Irvine, CA 92617, USA.,University of Chinese Academy of Sciences, Beijing, China.,Howard Hughes Medical Institute, Stanford University, Stanford, United States.,Structural Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, 14195 Berlin, Germany.,Department of Pharmacology, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC, USA. bryan_roth@med.unc.edu.,Departments of Bioengineering, and of Microbiology and Immunology, and James H. Clark Center, Stanford University, Stanford, CA, 94305, USA.,Laboratory on the Mechanism and Regulation of Protein Synthesis, Eunice K Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.,Protein Biochemistry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, 14195 Berlin, Germany. Electronic address: chfreund@zedat.fu-berlin.de.,Department of Medical Biology, University of Melbourne, Parkville, Victoria 3010, Australia.,National Institute of Mental Health Psychoactive Drug Screening Program (NIMH PDSP), School of Medicine, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC, USA. bryan_roth@med.unc.edu.,MRC Laboratory of Molecular Biology, Cambridge, United Kingdom.,School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, QLD 4072, Australia; luke.guddat@uq.edu.au.,Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, United States.,School of Chemistry and Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia.,Department of Chemical Sciences, University of Naples Federico II, 80126 Napoli, Italy. cuccioli@unina.it.,Max Planck Institute for Terrestrial Microbiology, D-35043 Marburg, Germany.,Department of Chemical Sciences, University of Naples Federico II, Complesso Universitario di Monte Sant'Angelo, via Cinthia 21, 80126, Naples, Italy.,Department of Photon Science, Stanford University, Stanford, United States.,Astex Pharmaceuticals, 436 Cambridge Science Park, Milton Road, Cambridge CB4 0QA, UK.,Department of Biophysics, The Health Science Center, Peking University, Beijing, 100191, China. Electronic address: 492195372@qq.com.,State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Institute of Marine Science and Technology, Shandong University, Jinan, China.,Department of Microbiology, The Fourth Military Medical University, Xian, Shanxi, China. zhikaixu@fmmu.edu.cn.,Killer Cell Biology Laboratory, Peter MacCallum Cancer Centre, Melbourne, VIC, Australia. ilia.voskoboinik@petermac.org.,Department of Crystallography and Structural Biology, Instituto de Química-Física "Rocasolano," Consejo Superior de Investigaciones Científicas, E-28006 Madrid, Spain.,Institute of Chemistry and Biotechnology, Center of Molecular Biology, ZHAW Zurich University of Applied Sciences, Einsiedlerstrasse 31, 8820, Wädenswil, Switzerland.,Department of Medical Biochemistry, Faculty of Medicine, Alexandria University, Egypt.,Department of Cell Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.,Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, No. 20, Nanxincun, Xiangshan, Beijing, 100093, China.,Roy and Diana Vagelos Laboratories, Department of Chemistry , University of Pennsylvania , 231 South 34th Street , Philadelphia , Pennsylvania 19104-6323 , United States.,Department of Environmental Engineering, Chosun University, Gwangju, 61452, Republic of Korea.,Department of Virology, Beijing Institute of Microbiology and Epidemiology, Beijing, China.,Center for Cellular Imaging and NanoAnalytics, Biozentrum, University of Basel, Mattenstrasse 26, 4058 Basel, Switzerland.,Microbiology Division, CSIR-Central Drug Research Institute, Lucknow 226031, India.,GlaxoSmithKline, 5 Moore Drive, P.O. Box 13398, Research Triangle Park, NC 27709, USA. Electronic address: david.n.deaton@gsk.com.,Department of Biophysics, The Health Science Center, Peking University, Beijing, 100191, China. Electronic address: liucc@bjmu.edu.cn.,Department of Biochemistry, Geisel School of Medicine, Dartmouth College, Hanover, New Hampshire, USA.,Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, 91125, USA.,Universität Wien, Fakultät für Chemie, Institut für Biophysikalische Chemie, Althanstraße 14, 1090, Wien, Austria.,Department of Medical Chemistry, Faculty of Medicine, University of Debrecen, Egyetem tér 1, H-4032 Debrecen, Hungary.,Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. bryan_roth@med.unc.edu.,Physical and Theoretical Chemistry Laboratory, University of Oxford, OX1 3QZ Oxford, United Kingdom.,Unilever Discover, Bedford, United Kingdom.,Institute for Quantitative Biosciences, The University of Tokyo, 113-0032 Tokyo, Japan ct@iam.u-tokyo.ac.jp.,State Key Laboratory of Molecular Biology, CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China.,Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Project Group Translational Medicine & Pharmacology TMP, Theodor-Stern-Kai 7, 60596, Frankfurt, Germany.,Department of Pharmacology, School of Medicine, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA.,Ministry of Education Key Laboratory of Protein Science, School of Life Sciences, Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, Tsinghua University, Beijing, 100084, China.,Laboratory of Structural BiolspringDE@2017ogy, School of Medicine, Tsinghua University, Beijing, China. raozh@tsinghua.edu.cn.,University of Chinese Academy of Sciences, Beijing, 100049, China.,Ion Mobility-Mass Spectrometry, Institute of Chemistry and Biochemistry, Freie Universität Berlin, 14195 Berlin, Germany.,Charles River , Leiden 2333 CR , Netherlands.,Laboratory of Gene Regulation and Development, Eunice K Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, United States.,Department of Biochemistry, Howard Hughes Medical Institute, Brandeis University , 415 South Street, Waltham, Massachusetts 02453, United States.,Institute of Chemistry and Biotechnology, Center of Organic and Medicinal Chemistry, ZHAW Zurich University of Applied Sciences, Einsiedlerstrasse 31, 8820, Wädenswil, Switzerland.,Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard, Cambridge, MA 02139-3583, USA.,National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing , China.,GlaxoSmithKline, Gunnels Wood Road, Stevenage, Hertfordshire SG1 2NY, UK.,Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556.,Department of Medicine, University of Tennessee Health Science Center, Memphis, TN, 38163, United States.,Max Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany; dan.tawfik@weizmann.ac.il Bar-Even@mpimp-golm.mpg.de.,Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Project Group Translational Medicine & Pharmacology TMP, Theodor-Stern-Kai 7, 60596, Frankfurt, Germany; Institute of Biochemistry I, Faculty of Medicine, Goethe-University Frankfurt, Theodor-Stern-Kai 7, 60596, Frankfurt, Germany.,Institute of Microbial Technology, Chandigarh, Council of Scientific and Industrial Research, Chandigarh 160 036, India.,Chemspace, Riga, Latvia.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HLA class I histocompatibility antigen, B-37 alpha chain
A
276N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NP388 peptide
B
9N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
C
100Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, C
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.31 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.172 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 50.880α = 90.00
b = 81.789β = 90.00
c = 110.192γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PDB_EXTRACTdata extraction
PHASERphasing
SCALAdata scaling
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-10-19 
  • Released Date: 2019-02-13 
  • Deposition Author(s): Gras, S.

Revision History 

  • Version 1.0: 2019-02-13
    Type: Initial release