6MT6

Crystal Structure of HLA-B*37:01 in complex with NP338 influenza peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.31 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Broad CD8+T cell cross-recognition of distinct influenza A strains in humans.

Grant, E.J.Josephs, T.M.Loh, L.Clemens, E.B.Sant, S.Bharadwaj, M.Chen, W.Rossjohn, J.Gras, S.Kedzierska, K.

(2018) Nat Commun 9: 5427-5427


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HLA class I histocompatibility antigen, B-37 alpha chain
A
276Homo sapiensMutation(s): 0 
Gene Names: HLA-B (HLAB)
Find proteins for P18463 (Homo sapiens)
Go to Gene View: HLA-B
Go to UniProtKB:  P18463
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
NP388 peptide
B
9N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
C
100Homo sapiensMutation(s): 0 
Gene Names: B2M
Find proteins for P61769 (Homo sapiens)
Go to Gene View: B2M
Go to UniProtKB:  P61769
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, C
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.31 Å
  • R-Value Free: 0.193 
  • R-Value Work: 0.172 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 50.880α = 90.00
b = 81.789β = 90.00
c = 110.192γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
BUSTERrefinement
SCALAdata scaling
XDSdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-10-19 
  • Released Date: 2019-02-13 
  • Deposition Author(s): Gras, S.

Revision History 

  • Version 1.0: 2019-02-13
    Type: Initial release