6LXT

Structure of post fusion core of 2019-nCoV S2 subunit


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.259 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of HR2 domain of 2019-nCoV S2 subunit

Zhu, Y.Sun, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2019-nCoV S2 subunit,2019-nCoV S2 subunit
A, B, C, D, E, F
132Bat SARS coronavirus HKU3-7Mutation(s): 0 
Gene Names: S
Find proteins for D5HJT4 (Bat SARS coronavirus HKU3-7)
Go to UniProtKB:  D5HJT4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, B, F
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
PG4
Query on PG4

Download SDF File 
Download CCD File 
A
TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.290 
  • R-Value Work: 0.259 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 51.240α = 90.00
b = 57.580β = 91.58
c = 115.720γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
Aimlessdata scaling
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2020-02-11 
  • Released Date: 2020-02-26 
  • Deposition Author(s): Zhu, Y., Sun, F.

Revision History 

  • Version 1.0: 2020-02-26
    Type: Initial release