6KXO

Crystal Structure Of VIM-2 Metallo-beta-lactamase In Complex With Inhibitor NO9


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.169 
  • R-Value Work: 0.146 

wwPDB Validation 3D Report Full Report



Literature

Crystal Structure Of VIM-2 Metallo-beta-lactamase In Complex With Inhibitor NO9

Wachino, J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-lactamase class B VIM-2AB240Pseudomonas aeruginosaMutation(s): 0 
Gene Names: bla vim-2bla-VIM-2blasVIM-2blaVIM-2blaVIM2VIM-2IPC669_36195vim-2blmPaeAG1_03246
Find proteins for Q9K2N0 (Pseudomonas aeruginosa)
Explore Q9K2N0 
Go to UniProtKB:  Q9K2N0
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NO9
Query on NO9

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A, B
2,5-dimethyl-4-sulfamoyl-furan-3-carboxylic acid
C7 H9 N O5 S
YPWRJNLSEWKOGW-UHFFFAOYSA-N
 Ligand Interaction
ZN
Query on ZN

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A, B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
FMT
Query on FMT

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A, B
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.49 Å
  • R-Value Free: 0.169 
  • R-Value Work: 0.146 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 101.501α = 90
b = 79.21β = 130.13
c = 67.66γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2019-09-12 
  • Released Date: 2020-02-19 
  • Deposition Author(s): Wachino, J.

Revision History 

  • Version 1.0: 2020-02-19
    Type: Initial release