6KKZ

Crystal structure of the S65T/F99S/M153T/V163A variant of perdeuterated GFP at pD 8.5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.90 Å
  • R-Value Free: 0.123 
  • R-Value Work: 0.107 
  • R-Value Observed: 0.108 

wwPDB Validation   3D Report Full Report



Literature

X-ray crystallographic studies on the hydrogen isotope effects of green fluorescent protein at sub-angstrom resolutions

Tai, Y.Takaba, K.Hanazono, Y.Dao, H.A.Miki, K.Takeda, K.

(2019) Acta Crystallogr D Biol Crystallogr 75: 1096-1106


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Green fluorescent proteinA228Aequorea victoriaMutation(s): 4 
Gene Names: GFP
Find proteins for P42212 (Aequorea victoria)
Explore P42212 
Go to UniProtKB:  P42212
Protein Feature View
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CRO
Query on CRO
AL-PEPTIDE LINKINGC15 H17 N3 O5THR, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.90 Å
  • R-Value Free: 0.123 
  • R-Value Work: 0.107 
  • R-Value Observed: 0.108 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 50.762α = 90
b = 62.112β = 90
c = 68.911γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
DENZOdata reduction
MOLREPphasing
SHELXLrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of ScienceJapan17H03643
Ministry of Education, Culture, Sports, Science and Technology (Japan)JapanPhoton and Quantum Basic Research Coordinated Development Program

Revision History 

  • Version 1.0: 2019-12-11
    Type: Initial release