6KJV

Structure of thermal-stabilised(M9) human GLP-1 receptor transmembrane domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.247 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Mutagenesis facilitated crystallization of GLP-1R

Xu, Y.M.Wang, Y.X.Wang, Y.Liu, K.W.Peng, Y.Yao, D.Q.Tao, H.Liu, H.G.Song, G.J.

(2019) Iucrj 6: 996-1006


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glucagon-like peptide 1 receptor,Endolysin,Glucagon-like peptide 1 receptor
A, B
455Homo sapiensEnterobacteria phage T4
This entity is chimeric
Mutation(s): 13 
Gene Names: GLP1R, E
EC: 3.2.1.17
Find proteins for P43220 (Homo sapiens)
Go to Gene View: GLP1R
Go to UniProtKB:  P43220
Find proteins for P00720 (Enterobacteria phage T4)
Go to UniProtKB:  P00720
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
97Y
Query on 97Y

Download SDF File 
Download CCD File 
A, B
N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine
C26 H28 F3 N5 O3
MYZIDYJMNWEJMC-QHCPKHFHSA-N
 Ligand Interaction
OLC
Query on OLC

Download SDF File 
Download CCD File 
A, B
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
1-Oleoyl-R-glycerol
C21 H40 O4
RZRNAYUHWVFMIP-GDCKJWNLSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.280 
  • R-Value Work: 0.247 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 65.030α = 91.53
b = 68.300β = 90.34
c = 83.430γ = 106.49
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XDSdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2019-07-23 
  • Released Date: 2019-11-13 
  • Deposition Author(s): Song, G.J.

Revision History 

  • Version 1.0: 2019-11-13
    Type: Initial release