6K15

RSC substrate-recruitment module

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structure of the RSC complex bound to the nucleosome.

Ye, Y., Wu, H., Chen, K., Clapier, C.R., Verma, N., Zhang, W., Deng, H., Cairns, B.R., Gao, N., Chen, Z.

(2019) Science 366: 838-843

  • DOI: 10.1126/science.aay0033
  • Primary Citation of Related Structures:  
    6K15, 6KW3, 6KW4

  • PubMed Abstract: 

    • The RSC complex remodels chromatin structure and regulates gene transcription. We used cryo-electron microscopy to determine the structure of yeast RSC bound to the nucleosome. RSC is delineated into the adenosine triphosphatase motor, the actin-related protein module, and the substrate recruitment module (SRM) ...

    The RSC complex remodels chromatin structure and regulates gene transcription. We used cryo-electron microscopy to determine the structure of yeast RSC bound to the nucleosome. RSC is delineated into the adenosine triphosphatase motor, the actin-related protein module, and the substrate recruitment module (SRM). RSC binds the nucleosome mainly through the motor, with the auxiliary subunit Sfh1 engaging the H2A-H2B acidic patch to enable nucleosome ejection. SRM is organized into three substrate-binding lobes poised to bind their respective nucleosomal epitopes. The relative orientations of the SRM and the motor on the nucleosome explain the directionality of DNA translocation and promoter nucleosome repositioning by RSC. Our findings shed light on RSC assembly and functionality, and they provide a framework to understand the mammalian homologs BAF/PBAF and the Sfh1 ortholog INI1/BAF47, which are frequently mutated in cancers.

    Organizational Affiliation: 

    Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, Beijing 100084, China.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex subunit RSC7 F435Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: NPL6, RSC7, YMR091C, YM9582.16C
Find proteins for P32832 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex protein RSC8 D, H557Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RSC8, SWH3, YFR037C
Find proteins for P43609 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex subunit RSC9 M581Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RSC9, YML127W, YM4987.08
Find proteins for Q03124 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex protein RSC6 I483Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RSC6, YCR052W, YCR52W
Find proteins for P25632 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex subunit SFH1 G426Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: SFH1, YLR321C, L8543.4
Find proteins for Q06168 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex protein RSC58 A502Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RSC58, YLR033W
Find proteins for Q07979 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Nuclear protein STH1/NPS1 J1359Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: STH1, NPS1, YIL126W
EC: 3.6.4.12
Find proteins for P32597 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
High temperature lethal protein 1 E78Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: HTL1, DRT1, YCR020W-B
Find proteins for Q9URQ5 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 9
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Chromatin structure-remodeling complex protein RSC30 C883Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RSC30, YHR056C
Find proteins for P38781 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex protein RSC3 K885Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RSC3, YDR303C, D9740.13
Find proteins for Q06639 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
Chromatin structure-remodeling complex subunit RSC4 X625Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RSC4, YKR008W, YK107
Find proteins for Q02206 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 12
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Chromatin structure-remodeling complex subunit RSC2 L889Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: RSC2, YLR357W, L9638.1
Find proteins for Q06488 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
Download Ideal Coordinates CCD File 
H
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: CELL 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-13
    Type: Initial release
  • Version 1.1: 2019-11-27
    Changes: Database references