6K0E

The quinary complex of AsqJ-Fe-2OG-dehydrocyclopeptin-dioxygen


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 

wwPDB Validation 3D Report Full Report



Literature

The quinary complex of AsqJ-Fe-2OG-dehydrocyclopeptin-dioxygen

Liao, H.J.Chan, N.L.

(2020) J Am Chem Soc 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Iron/alpha-ketoglutarate-dependent dioxygenase asqJB327Aspergillus nidulans FGSC A4Mutation(s): 0 
Gene Names: asqJAN9227
EC: 1.14
Find proteins for Q5AR53 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139))
Explore Q5AR53 
Go to UniProtKB:  Q5AR53
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CO0
Query on CO0

Download CCD File 
B
(3~{Z})-4-methyl-3-(phenylmethylidene)-1~{H}-1,4-benzodiazepine-2,5-dione
C17 H14 N2 O2
FYVKHLSOIIPVEH-PTNGSMBKSA-N
 Ligand Interaction
AKG
Query on AKG

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B
2-OXOGLUTARIC ACID
C5 H6 O5
KPGXRSRHYNQIFN-UHFFFAOYSA-N
 Ligand Interaction
FE
Query on FE

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B
FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
 Ligand Interaction
PEO
Query on PEO

Download CCD File 
B
HYDROGEN PEROXIDE
H2 O2
MHAJPDPJQMAIIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.178 
  • R-Value Observed: 0.180 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.805α = 90
b = 119.638β = 90
c = 67.198γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
Cootmodel building

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2019-05-06 
  • Released Date: 2020-03-18 
  • Deposition Author(s): Liao, H.J., Chan, N.L.

Revision History 

  • Version 1.0: 2020-03-18
    Type: Initial release