6JR7

Flavobacterium johnsoniae GH31 dextranase, FjDex31A, complexed with glucose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural insights into the polysaccharide recognition by Flavobacterium johnsoniae dextranase, a member of glycoside hydrolase family 31

Tsutsumi, K.Gozu, Y.Nishikawa, A.Tonozuka, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Candidate alpha-glycosidase Glycoside hydrolase family 31
A, B, C, D
838Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)Mutation(s): 0 
EC: 3.2.1.20
Find proteins for A5FBI1 (Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101))
Go to UniProtKB:  A5FBI1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, B, C, D
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
GLC
Query on GLC

Download SDF File 
Download CCD File 
A, B, C, D
ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
 Ligand Interaction
MPD
Query on MPD

Download SDF File 
Download CCD File 
A, B, C, D
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.185 
  • R-Value Work: 0.162 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 116.591α = 87.05
b = 102.602β = 113.07
c = 114.130γ = 118.53
Software Package:
Software NamePurpose
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2019-04-02 
  • Released Date: 2019-04-24 
  • Deposition Author(s): Tonozuka, T.

Funding OrganizationLocationGrant Number
Japan Society for the Promotion of ScienceJapan16K07687

Revision History 

  • Version 1.0: 2019-04-24
    Type: Initial release