Macromolecule Content

Total Structure Weight: 336.09 kDa
Atom Count: 22,793
Modelled Residue Count: 2,864
Deposited Residue Count: 3,032
Unique protein chains: 1

6JHP

Crystal structure of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila

PDB DOI: https://doi.org/10.2210/pdb6JHP/pdb

Classification: HYDROLASE
Organism(s): Paecilomyces sp. 'thermophila
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2019-02-18 Released: 2020-05-20
Deposition Author(s): Liu, Y., Huang, P., Ma, J., Jiang, Z.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.56 Å
R-Value Free: 0.226
R-Value Work: 0.167
R-Value Observed: 0.170

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure and phylogenetic analysis of the glycoside hydrolase family 36 alpha-galactosidase from Paecilomyces thermophila

Liu, Y., Huang, P., Ma, J., Jiang, Z.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-galactosidase	A, B, C, D	758	Paecilomyces sp. 'thermophila	Mutation(s): 0 EC: 3.2.1.22
UniProt
Find proteins for A0A2Z4HIN9 (Paecilomyces sp. 'thermophila') Explore A0A2Z4HIN9 Go to UniProtKB: A0A2Z4HIN9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A2Z4HIN9
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
TRS Query on TRS Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth B] SDF format, chain H [auth C] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth B] MOL2 format, chain H [auth C]	E [auth A], F [auth A], G [auth B], H [auth C]	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C₄ H₁₂ N O₃ LENZDBCJOHFCAS-UHFFFAOYSA-O		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.56 Å
R-Value Free: 0.226
R-Value Work: 0.167
R-Value Observed: 0.170
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.25	α = 90
b = 173.043	β = 90
c = 177.277	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-05-20

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2020-05-20
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.