6IJF

Crystal structure of the type VI effector-immunity complex (Tae4-Tai4) from Agrobacterium tumefaciens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the Agrobacterium tumefaciens type VI effector-immunity complex.

Fukuhara, S.Nakane, T.Yamashita, K.Ishii, R.Ishitani, R.Nureki, O.

(2018) Acta Crystallogr F Struct Biol Commun 74: 810-816


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tai4
A, B
107Rhizobium radiobacterMutation(s): 0 
Find proteins for A0A083ZID3 (Rhizobium radiobacter)
Go to UniProtKB:  A0A083ZID3
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Tae4
C, D
164Rhizobium radiobacterMutation(s): 0 
Find proteins for A0A083ZID4 (Rhizobium radiobacter)
Go to UniProtKB:  A0A083ZID4
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
C
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
1PE
Query on 1PE

Download SDF File 
Download CCD File 
A
PENTAETHYLENE GLYCOL
PEG400
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.190 
  • Space Group: P 61
Unit Cell:
Length (Å)Angle (°)
a = 72.025α = 90.00
b = 72.025β = 90.00
c = 194.348γ = 120.00
Software Package:
Software NamePurpose
Aimlessdata scaling
DIALSdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-12-19
    Type: Initial release