6IF1

Crystal structure of Ube2K and K48-linked di-ubiquitin complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.466 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the Ube2K/E2-25K and K48-linked di-ubiquitin complex provides structural insight into the mechanism of K48-specific ubiquitin chain synthesis.

Lee, J.G.Youn, H.S.Kang, J.Y.Park, S.Y.Kidera, A.Yoo, Y.J.Eom, S.H.

(2018) Biochem. Biophys. Res. Commun. 506: 102-107


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin-conjugating enzyme E2 K
A, B
199Homo sapiensMutation(s): 0 
Gene Names: UBE2K (HIP2, LIG)
EC: 2.3.2.23
Find proteins for P61086 (Homo sapiens)
Go to Gene View: UBE2K
Go to UniProtKB:  P61086
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Ubiquitin
C, D
76Homo sapiensMutation(s): 0 
Gene Names: UBB
Find proteins for P0CG47 (Homo sapiens)
Go to Gene View: UBB
Go to UniProtKB:  P0CG47
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.466 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.215 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 41.559α = 90.00
b = 38.792β = 90.10
c = 190.321γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PHASERphasing
PHENIXrefinement
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-11-21
    Type: Initial release