6IBL

ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST FORMOTEROL AND NANOBODY Nb80


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.240 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Molecular basis for high affinity agonist binding in GPCRs

Warne, T.Edwards, P.C.Dore, A.S.Leslie, A.G.W.Tate, C.G.

(2018) Biorxiv --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Thioredoxin 1,Beta-1 adrenergic receptor
A, B
416Meleagris gallopavoEscherichia coli (strain K12)
This entity is chimeric
Mutation(s): 6 
Gene Names: ADRB1, trxA (fipA, tsnC)
Find proteins for P07700 (Meleagris gallopavo)
Go to Gene View: ADRB1
Go to UniProtKB:  P07700
Find proteins for P0AA25 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AA25
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Camelid antibody fragment Nb80
C, D
121N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A, B
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
H98
Query on H98

Download SDF File 
Download CCD File 
A, B
~{N}-[5-[(1~{R})-2-[[(2~{R})-1-(4-methoxyphenyl)propan-2-yl]amino]-1-oxidanyl-ethyl]-2-oxidanyl-phenyl]methanamide
C19 H24 N2 O4
BPZSYCZIITTYBL-YJYMSZOUSA-N
 Ligand Interaction
2CV
Query on 2CV

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Download CCD File 
A, B
HEGA-10
C18 H37 N O7
ITEIKACYSCODFV-ATLSCFEFSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.240 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 116.650α = 90.00
b = 121.120β = 90.00
c = 129.840γ = 90.00
Software Package:
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
MOSFLMdata reduction
REFMACphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-01-09
    Type: Initial release
  • Version 1.1: 2019-05-22
    Type: Data collection, Database references