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ACTIVATED TURKEY BETA1 ADRENOCEPTOR WITH BOUND AGONIST FORMOTEROL AND NANOBODY Nb80
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H6X 2H6X, 3P0G experimental model PDB 3P0G 2H6X, 3P0G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 0.1 M Hepes-NaOH pH7.5 and 21-24% PEG1500
Crystal Properties Matthews coefficient Solvent content 4.02 69.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.65 α = 90 b = 121.12 β = 90 c = 129.84 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 2M 2015-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.966 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 88.57 99 6.6 4.6 50611
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2H6X, 3P0G 2.7 44.32 30378 1570 62.71 0.24135 0.23953 0.2436 0.27659 0.2424 RANDOM 66.667
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.21 1.34 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.641 r_dihedral_angle_4_deg 14.654 r_dihedral_angle_3_deg 13.098 r_long_range_B_refined 10.435 r_long_range_B_other 10.434 r_mcangle_it 7.178 r_mcangle_other 7.177 r_scangle_other 6.849 r_dihedral_angle_1_deg 6.228 r_mcbond_it 4.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.641 r_dihedral_angle_4_deg 14.654 r_dihedral_angle_3_deg 13.098 r_long_range_B_refined 10.435 r_long_range_B_other 10.434 r_mcangle_it 7.178 r_mcangle_other 7.177 r_scangle_other 6.849 r_dihedral_angle_1_deg 6.228 r_mcbond_it 4.391 r_mcbond_other 4.388 r_scbond_it 4.085 r_scbond_other 4.084 r_angle_refined_deg 1.541 r_angle_other_deg 1.122 r_chiral_restr 0.067 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7984 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 258
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling REFMAC phasing