6HZI

Apo structure of TP domain from Burkholderia pseudomallei penicillin-binding protein 3

• PDB DOI: https://doi.org/10.2210/pdb6HZI/pdb

• Classification: PEPTIDE BINDING PROTEIN
• Organism(s): Burkholderia pseudomallei
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2018-10-23 Released: 2019-11-20 
• Deposition Author(s): Bellini, D., Koekemoer, L., Newman, H., Dowson, C.G.
• Funding Organization(s): Medical Research Council (United Kingdom)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.29 Å
• R-Value Work: 0.196 
• R-Value Observed: 0.196 

Literature

Apo structure of TP domain from Burkholderia pseudomallei penicillin-binding protein 3

Bellini, D., Koekemoer, L., Newman, H., Dowson, C.G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 39.75 kDa 
• Atom Count: 2,550 
• Modelled Residue Count: 331 
• Deposited Residue Count: 374 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidoglycan D,D-transpeptidase FtsI	A	374	Burkholderia pseudomallei	Mutation(s): 0  Gene Names: ftsI, CXQ84_03210, DP46_2053 EC: 3.4.16.4
UniProt
Find proteins for Q63QJ1 (Burkholderia pseudomallei (strain K96243)) Explore Q63QJ1  Go to UniProtKB:  Q63QJ1

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.29 Å
• R-Value Work: 0.196 
• R-Value Observed: 0.196 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.394	α = 90
b = 106.394	β = 90
c = 95.678	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
MrBUMP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-11-20 
Deposition Author(s): Bellini, D., Koekemoer, L., Newman, H., Dowson, C.G.

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Funding Organization	Location	Grant Number
Medical Research Council (United Kingdom)	United Kingdom	grant.MR/P007503/1

Revision History  

• Version 1.0: 2019-11-20
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Refinement description