6HWJ

Glucosamine kinase (crystal form A)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.979 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Molecular fingerprints for a novel enzyme family in Actinobacteria with glucosamine kinase activity

Manso, J.A.Nunes-Costa, D.Macedo-Ribeiro, S.Empadinhas, N.Pereira, P.J.B.

(2019) Mbio --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Maltokinase
A, B
451Streptacidiphilus jiangxiensisMutation(s): 0 
Find proteins for A0A1H7TQR5 (Streptacidiphilus jiangxiensis)
Go to UniProtKB:  A0A1H7TQR5
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

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Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
BTB
Query on BTB

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Download CCD File 
A
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
BIS-TRIS BUFFER
C8 H19 N O5
OWMVSZAMULFTJU-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.979 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.176 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 59.812α = 90.00
b = 96.070β = 106.69
c = 80.252γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
MrBUMPphasing
AutoPROCdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-05-01
    Type: Initial release