6HSO

Crystal structure of the ternary complex of GephE-ADP-Glycine receptor derived peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Elucidating the Molecular Basis for Inhibitory Neurotransmission Regulation by Artemisinins.

Kasaragod, V.B.Hausrat, T.J.Schaefer, N.Kuhn, M.Christensen, N.R.Tessmer, I.Maric, H.M.Madsen, K.L.Sotriffer, C.Villmann, C.Kneussel, M.Schindelin, H.

(2019) Neuron 101: 673-689.e11


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Gephyrin
A
419Rattus norvegicusMutation(s): 0 
Gene Names: Gphn (Gph)
Find proteins for Q03555 (Rattus norvegicus)
Go to UniProtKB:  Q03555
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Glycine receptor beta subunit derived peptide
D, I
11N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

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A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
ACT
Query on ACT

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A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
ADP
Query on ADP

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Download CCD File 
A
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
MG
Query on MG

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A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
3F7
Query on 3F7

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D
1,1'-benzene-1,4-diylbis(1H-pyrrole-2,5-dione)
C14 H8 N2 O4
AQGZJQNZNONGKY-UHFFFAOYSA-N
 Ligand Interaction
MPD
Query on MPD

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Download CCD File 
A
(4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.166 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 88.090α = 90.00
b = 99.649β = 90.00
c = 113.002γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
Aimlessdata scaling
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanySCHI 425/ 8-2

Revision History 

  • Version 1.0: 2019-01-16
    Type: Initial release
  • Version 1.1: 2019-01-30
    Type: Data collection, Derived calculations
  • Version 1.2: 2019-02-13
    Type: Data collection, Database references
  • Version 1.3: 2019-03-06
    Type: Data collection, Database references