6HP5

ARBITRIUM PEPTIDE RECEPTOR FROM SPBETA PHAGE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Deciphering the Molecular Mechanism Underpinning Phage Arbitrium Communication Systems.

Gallego Del Sol, F.Penades, J.R.Marina, A.

(2019) Mol.Cell 74: 59-72.e3


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SPBc2 prophage-derived uncharacterized protein YopK
A, B
386Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: yopK
Find proteins for O31927 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O31927
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
GLY-MET-PRO-ARG-GLY-ALA
C, D
6N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.190 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 94.340α = 90.00
b = 94.340β = 90.00
c = 249.950γ = 90.00
Software Package:
Software NamePurpose
CRANK2phasing
REFMACrefinement
SCALAdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-02-20
    Type: Initial release
  • Version 1.1: 2019-04-17
    Type: Data collection, Database references