6HJP

Structure of Influenza Hemagglutinin ectodomain (A/duck/Alberta/35/76) in complex with FISW84 Fab Fragment


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Influenza hemagglutinin membrane anchor.

Benton, D.J.Nans, A.Calder, L.J.Turner, J.Neu, U.Lin, Y.P.Ketelaars, E.Kallewaard, N.L.Corti, D.Lanzavecchia, A.Gamblin, S.J.Rosenthal, P.B.Skehel, J.J.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: 10112-10117


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hemagglutinin
A, C, E
324Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1)Mutation(s): 0 
Gene Names: HA
Find proteins for Q9WCE0 (Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
Go to UniProtKB:  Q9WCE0
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Hemagglutinin
B, D, F
174Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1)Mutation(s): 0 
Gene Names: HA
Find proteins for P26562 (Influenza A virus (strain A/Duck/Alberta/35/1976 H1N1))
Go to UniProtKB:  P26562
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Heavy chain of FISW84 Fab Fragment
G, I, K
216N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Light chain of FISW84 Fab Fragment
H, J, L
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MAN
Query on MAN

Download SDF File 
Download CCD File 
A, C, E
ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
 Ligand Interaction
FUC
Query on FUC

Download SDF File 
Download CCD File 
A, C, E
ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
 Ligand Interaction
BMA
Query on BMA

Download SDF File 
Download CCD File 
A, B, C, D, E, F
BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
 Ligand Interaction
UPL
Query on UPL

Download SDF File 
Download CCD File 
B, D, F
UNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID
UNKNOWN PHOSPHOLIPID FRAGMENT
C34 H70
QPCSNFPFMCVVAI-UHFFFAOYSA-N
 Ligand Interaction
NAG
Query on NAG

Download SDF File 
Download CCD File 
A, B, C, D, E, F
N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Cancer Research UKUnited KingdomFC001078
Cancer Research UKUnited KingdomFC001143
Medical Research Council (United Kingdom)United KingdomFC001078
Medical Research Council (United Kingdom)United KingdomFC001143
Wellcome TrustUnited KingdomFC001078
Wellcome TrustUnited KingdomFC001143
European Research CouncilUnited Kingdom629829

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-10
    Type: Data collection, Database references, Structure summary