6HFV

Mycobacterium tuberculosis DprE1 in complex with CMP2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Novel insight into the reaction of nitro, nitroso and hydroxylamino benzothiazinones and of benzoxacinones with Mycobacterium tuberculosis DprE1.

Richter, A.Rudolph, I.Mollmann, U.Voigt, K.Chung, C.W.Singh, O.M.P.Rees, M.Mendoza-Losana, A.Bates, R.Ballell, L.Batt, S.Veerapen, N.Futterer, K.Besra, G.Imming, P.Argyrou, A.

(2018) Sci Rep 8: 13473-13473


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Decaprenylphosphoryl-beta-D-ribose oxidase
A, B
475Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)Mutation(s): 0 
Gene Names: dprE1
EC: 1.1.98.3
Find proteins for P9WJF1 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv))
Go to UniProtKB:  P9WJF1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FAD
Query on FAD

Download SDF File 
Download CCD File 
A, B
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
G1Z
Query on G1Z

Download SDF File 
Download CCD File 
A, B
8-(oxidanylamino)-2-piperidin-1-yl-6-(trifluoromethyl)-1,3-benzothiazin-4-one
C14 H14 F3 N3 O2 S
NFTFZGDVDRYPDT-UHFFFAOYSA-N
 Ligand Interaction
IMD
Query on IMD

Download SDF File 
Download CCD File 
A, B
IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.176 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 78.080α = 90.00
b = 84.430β = 103.00
c = 80.450γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-08-21 
  • Released Date: 2018-09-19 
  • Deposition Author(s): Chung, C.

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release