6H9H

Csf5, CRISPR-Cas type IV Cas6 crRNA endonuclease


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Type IV CRISPR RNA processing and effector complex formation in Aromatoleum aromaticum

Oezkan, A.Pausch, P.Linden, A.Wulf, A.Schuele, K.Heider, J.Urlaub, H.Heimerl, T.Bange, G.Randau, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Csf5
B, A
266Aromatoleum aromaticum (strain EbN1)Mutation(s): 0 
Find proteins for Q5NWP0 (Aromatoleum aromaticum (strain EbN1))
Go to UniProtKB:  Q5NWP0
Entity ID: 2
MoleculeChainsLengthOrganism
crRNAD,E26Aromatoleum aromaticum EbN1
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download SDF File 
Download CCD File 
B
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
TLA
Query on TLA

Download SDF File 
Download CCD File 
A, D, E
L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
23G
Query on 23G
D, E
RNA OH 3 prime terminusC10 H13 N5 O10 P2G
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.237 
  • R-Value Work: 0.212 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 85.563α = 90.00
b = 100.989β = 90.00
c = 101.933γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
XDSdata scaling
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-08-04 
  • Released Date: 2018-09-26 
  • Deposition Author(s): Pausch, P., Bange, G.

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release