6H7W

Model of retromer-Vps5 complex assembled on membrane.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.4 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the membrane-assembled retromer coat determined by cryo-electron tomography.

Kovtun, O.Leneva, N.Bykov, Y.S.Ariotti, N.Teasdale, R.D.Schaffer, M.Engel, B.D.Owen, D.J.Briggs, J.A.G.Collins, B.M.

(2018) Nature 561: 561-564


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Vacuolar protein sorting-associated protein 26-like protein
J, C
292Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
MONOTOPIC MEMBRANE PROTEINS
Sub Group: 
Membrane-Shaping Proteins
Protein: 
Retromer Vps26-Vps29-Vps35 complex
Find proteins for G0S0E6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Go to UniProtKB:  G0S0E6
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Putative vacuolar protein sorting-associated protein
B, A, G, E, P, N, H, F
368Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
MONOTOPIC MEMBRANE PROTEINS
Sub Group: 
Membrane-Shaping Proteins
Protein: 
Retromer Vps26-Vps29-Vps35 complex
Find proteins for G0SH11 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Go to UniProtKB:  G0SH11
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Putative vacuolar protein sorting-associated protein
D, K, V, L
129Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
MONOTOPIC MEMBRANE PROTEINS
Sub Group: 
Membrane-Shaping Proteins
Protein: 
Retromer Vps26-Vps29-Vps35 complex
Find proteins for G0SH11 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Go to UniProtKB:  G0SH11
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Putative vacuolar protein sorting-associated protein
O, M
220Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
MONOTOPIC MEMBRANE PROTEINS
Sub Group: 
Membrane-Shaping Proteins
Protein: 
Retromer Vps26-Vps29-Vps35 complex
Find proteins for G0SH11 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Go to UniProtKB:  G0SH11
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Vacuolar protein sorting-associated protein 29
S, T
193Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
MONOTOPIC MEMBRANE PROTEINS
Sub Group: 
Membrane-Shaping Proteins
Protein: 
Retromer Vps26-Vps29-Vps35 complex
Find proteins for G0RZB5 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Go to UniProtKB:  G0RZB5
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
Vacuolar protein sorting-associated protein 35
Q, R
846Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
MONOTOPIC MEMBRANE PROTEINS
Sub Group: 
Membrane-Shaping Proteins
Protein: 
Retromer Vps26-Vps29-Vps35 complex
Find proteins for G0S709 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Go to UniProtKB:  G0S709
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.4 Å
  • Aggregation State: 3D ARRAY 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (United Kingdom)United KingdomMC_UP_1201/16
Wellcome TrustUnited Kingdom207455/Z/17/Z
Australian Research CouncilAustraliaDP160101743
National Health and Medical Research Council (Australia)AustraliaAPP1042082
National Health and Medical Research Council (Australia)AustraliaAPP1058734
National Health and Medical Research Council (Australia)AustraliaAPP1041929
National Health and Medical Research Council (Australia)AustraliaAPP1136021

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-10
    Type: Data collection, Database references