6H7W | pdb_00006h7w

Model of retromer-Vps5 complex assembled on membrane.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth J]SCOP2B SuperfamilyArrestin/Vps26-like 8067161 3002071 SCOP2B (2022-06-29)
A [auth J]SCOP2B SuperfamilyArrestin/Vps26-like 8102529 3002071 SCOP2B (2022-06-29)
B [auth C]SCOP2 FamilyVps26-like 8067160 4004065 SCOP2 (2022-06-29)
B [auth C]SCOP2 SuperfamilyArrestin/Vps26-like 8067161 3002071 SCOP2 (2022-06-29)
B [auth C]SCOP2 SuperfamilyArrestin/Vps26-like 8102529 3002071 SCOP2 (2022-06-29)
C [auth B]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
C [auth B]SCOP2B SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2B (2022-06-29)
D [auth A]SCOP2B SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2B (2022-06-29)
D [auth A]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
J [auth P]SCOP2B SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2B (2022-06-29)
J [auth P]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
L [auth N]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
L [auth N]SCOP2B SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2B (2022-06-29)
M [auth H]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
M [auth H]SCOP2B SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2B (2022-06-29)
N [auth F]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
N [auth F]SCOP2B SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2B (2022-06-29)
E [auth D]SCOP2 FamilyPX domain 8084580 4003533 SCOP2 (2022-06-29)
E [auth D]SCOP2 SuperfamilyPX domain 8084581 3001006 SCOP2 (2022-06-29)
O [auth V]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
H [auth K]SCOP2B SuperfamilyPX domain 8084581 3001006 SCOP2B (2022-06-29)
I [auth O]SCOP2B SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2B (2022-06-29)
K [auth M]SCOP2 FamilyVps5 C-terminal domain-like 8084771 4004079 SCOP2 (2022-06-29)
K [auth M]SCOP2 SuperfamilyBAR/IMD domain-like 8084772 3000528 SCOP2 (2022-06-29)
Q [auth S]SCOP2B SuperfamilyMetallo-dependent phosphatases 8085939 3001067 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyMetallo-dependent phosphatases 8085939 3001067 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth J]e6h7wJ1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF:ECOD (v294.1)
B [auth C]Anoctamine6h7wC1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
C [auth B]e6h7wB1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF:ECOD (v294.1)
D [auth A]Anoctamine6h7wA1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
F [auth G]Anoctamine6h7wG1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
G [auth E]Anoctamine6h7wE1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
J [auth P]Anoctamine6h7wP1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
L [auth N]Anoctamine6h7wN1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
M [auth H]Anoctamine6h7wH1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
N [auth F]Anoctamine6h7wF1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
E [auth D]Anoctamine6h7wD1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
O [auth V]Anoctamine6h7wV1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
P [auth L]Anoctamine6h7wL1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
H [auth K]Anoctamine6h7wK1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
I [auth O]Anoctamine6h7wO1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
K [auth M]Anoctamine6h7wM1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
Q [auth S]e6h7wS1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF:ECOD (v294.1)
S [auth T]Anoctamine6h7wT1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)
R [auth Q]e6h7wQ1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF:ECOD (v294.1)
T [auth R]Anoctamine6h7wR1 A: a/b three-layered sandwichesX: PriB N-terminal domain-likeH: gp11/gp12 receptor-binding domainT: gp11/gp12 receptor-binding domainF: AnoctaminECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth J],
B [auth C]
PF03643Vacuolar protein sorting-associated protein 26 (Vps26)Vacuolar protein sorting-associated protein 26- Family
PF00787PX domain (PX)PX domainPX domains bind to phosphoinositides. Domain
E [auth D],
H [auth K],
O [auth V],
P [auth L]
PF00787PX domain (PX)PX domainPX domains bind to phosphoinositides. Domain
I [auth O],
K [auth M]
PF09325Vps5 C terminal like (Vps5)Vps5 C terminal likeVps5 is a sorting nexin that functions in membrane trafficking. This is the C terminal dimerisation domain [1]. Domain
Q [auth S],
S [auth T]
PF12850Calcineurin-like phosphoesterase superfamily domain (Metallophos_2)Calcineurin-like phosphoesterase superfamily domainMembers of this family are part of the Calcineurin-like phosphoesterase superfamily. Domain
R [auth Q],
T [auth R]
PF03635Vacuolar protein sorting-associated protein 35 (Vps35)Vacuolar protein sorting-associated protein 35- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth J],
B [auth C]
Vacuolar protein sorting-associated protein 26-like protein- -
Putative vacuolar protein sorting-associated protein
E [auth D],
H [auth K],
O [auth V],
P [auth L]
Putative vacuolar protein sorting-associated protein
I [auth O],
K [auth M]
Putative vacuolar protein sorting-associated protein
Q [auth S],
S [auth T]
Vacuolar protein sorting-associated protein 29-
R [auth Q],
T [auth R]
Vacuolar protein sorting-associated protein 35-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth J],
B [auth C]
IPR014752Arrestin-like, C-terminal domain superfamilyHomologous Superfamily
A [auth J],
B [auth C]
IPR028934Vacuolar protein sorting protein 26 relatedFamily
IPR001683Phox homologyDomain
IPR036871PX domain superfamilyHomologous Superfamily
IPR027267AH/BAR domain superfamilyHomologous Superfamily
IPR015404Sorting nexin/Vps5-like, C-terminalDomain
IPR035803Sorting nexin Vps5, BAR domainDomain
E [auth D],
H [auth K],
O [auth V],
P [auth L]
IPR001683Phox homologyDomain
E [auth D],
H [auth K],
O [auth V],
P [auth L]
IPR036871PX domain superfamilyHomologous Superfamily
E [auth D],
H [auth K],
O [auth V],
P [auth L]
IPR027267AH/BAR domain superfamilyHomologous Superfamily
E [auth D],
H [auth K],
O [auth V],
P [auth L]
IPR015404Sorting nexin/Vps5-like, C-terminalDomain
E [auth D],
H [auth K],
O [auth V],
P [auth L]
IPR035803Sorting nexin Vps5, BAR domainDomain
I [auth O],
K [auth M]
IPR001683Phox homologyDomain
I [auth O],
K [auth M]
IPR036871PX domain superfamilyHomologous Superfamily
I [auth O],
K [auth M]
IPR027267AH/BAR domain superfamilyHomologous Superfamily
I [auth O],
K [auth M]
IPR015404Sorting nexin/Vps5-like, C-terminalDomain
I [auth O],
K [auth M]
IPR035803Sorting nexin Vps5, BAR domainDomain
Q [auth S],
S [auth T]
IPR000979Phosphodiesterase MJ0936/Vps29Family
Q [auth S],
S [auth T]
IPR028661Vacuolar protein sorting-associated protein 29Family
Q [auth S],
S [auth T]
IPR024654Calcineurin-like phosphoesterase domain, lpxH-typeDomain
Q [auth S],
S [auth T]
IPR029052Metallo-dependent phosphatase-likeHomologous Superfamily
R [auth Q],
T [auth R]
IPR042491Vacuolar protein sorting-associated protein 35, C-terminalHomologous Superfamily
R [auth Q],
T [auth R]
IPR005378Vacuolar protein sorting-associated protein 35Family