6H2N

TarP-UDP-GlcNAc-Mg


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.178 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Methicillin-resistant Staphylococcus aureus alters cell wall glycosylation to evade immunity.

Gerlach, D.Guo, Y.De Castro, C.Kim, S.H.Schlatterer, K.Xu, F.F.Pereira, C.Seeberger, P.H.Ali, S.Codee, J.Sirisarn, W.Schulte, B.Wolz, C.Larsen, J.Molinaro, A.Lee, B.L.Xia, G.Stehle, T.Peschel, A.

(2018) Nature 563: 705-709


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Probable ss-1,3-N-acetylglucosaminyltransferase
A, B, C
345Staphylococcus aureus (strain N315)Mutation(s): 0 
Gene Names: tarP
EC: 2.4.1.-
Find proteins for A0A0H3JNB0 (Staphylococcus aureus (strain N315))
Go to UniProtKB:  A0A0H3JNB0
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A, B, C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B, C
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
UD1
Query on UD1

Download SDF File 
Download CCD File 
A, B, C
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
C17 H27 N3 O17 P2
LFTYTUAZOPRMMI-CFRASDGPSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.226 
  • R-Value Work: 0.178 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 43.850α = 90.00
b = 95.270β = 93.49
c = 130.220γ = 90.00
Software Package:
Software NamePurpose
SHARPphasing
REFMACrefinement
XSCALEdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-07-13 
  • Released Date: 2018-09-26 
  • Deposition Author(s): Guo, Y., Stehle, T.

Funding OrganizationLocationGrant Number
German Research FoundationGermanyTRR34, CRC766

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-11-21
    Type: Data collection, Database references
  • Version 1.2: 2018-12-05
    Type: Data collection, Database references
  • Version 1.3: 2018-12-12
    Type: Data collection, Database references