6GX6

Crystal structure of IMP3 RRM12 in complex with RNA (ACAC)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.180 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis of IMP3 RRM12 recognition of RNA.

Jia, M.Gut, H.Chao, J.A.

(2018) RNA --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Insulin-like growth factor 2 mRNA-binding protein 3
A
170Homo sapiensMutation(s): 0 
Gene Names: IGF2BP3 (IMP3, KOC1, VICKZ3)
Find proteins for O00425 (Homo sapiens)
Go to Gene View: IGF2BP3
Go to UniProtKB:  O00425
Entity ID: 2
MoleculeChainsLengthOrganism
RNA (5'-R(*AP*CP*AP*C)-3')B4Homo sapiens
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.180 
  • Space Group: P 31 2 1
Unit Cell:
Length (Å)Angle (°)
a = 75.440α = 90.00
b = 75.440β = 90.00
c = 66.260γ = 120.00
Software Package:
Software NamePurpose
SCALAdata scaling
PHENIXrefinement
Cootmodel building
MOSFLMdata reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland31003A_156477

Revision History 

  • Version 1.0: 2018-09-05
    Type: Initial release