6GN3

Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group P21/n


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.318 
  • R-Value Work: 0.280 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Racemic crystal structures of A-DNA duplexes

Mandal, P.K.Collie, G.W.Kauffmann, B.Huc, I.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*CP*CP*GP*GP*G)-3')A,B,C,D,E,F6synthetic construct
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

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C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
CO
Query on CO

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Download CCD File 
B, D
COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
 Ligand Interaction
TMO
Query on TMO

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A, B, F
trimethylamine oxide
C3 H9 N O
UYPYRKYUKCHHIB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.318 
  • R-Value Work: 0.280 
  • Space Group: P 1 21/n 1
Unit Cell:
Length (Å)Angle (°)
a = 48.883α = 90.00
b = 41.430β = 97.47
c = 71.958γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research CouncilFranceERC-2012-AdG-320892

Revision History 

  • Version 1.0: 2019-09-11
    Type: Initial release