Download MendeleyRacemic crystal structures of A-DNA duplexes
Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.To be published.
6GN3
Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group P21/n
- DOI: 10.2210/pdb6GN3/pdb
- NDB: 6GN3
- Classification: DNA
- Organism(s): synthetic construct
- Mutation(s): No
- Deposited: 2018-05-29 Released: 2019-09-11
- Funding Organization(s): European Research Council
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.318
- R-Value Work: 0.280
- R-Value Observed: 0.284
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Length | Organism | Image | |
| DNA (5'-D(*CP*CP*CP*GP*GP*G)-3') | A, B, C, D, E, F | 6 | synthetic construct |  | |
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TMO Query on TMO | A, B, F | trimethylamine oxide C3 H9 N O UYPYRKYUKCHHIB-UHFFFAOYSA-N |  | Ligand Interaction | |
| CO Query on CO | B, D | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | C | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.318
- R-Value Work: 0.280
- R-Value Observed: 0.284
- Space Group: P 1 21/n 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 48.883 | α = 90 |
| b = 41.43 | β = 97.47 |
| c = 71.958 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2018-05-29
- Released Date: 2019-09-11 Deposition Author(s): Mandal, P.K., Collie, G.W., Kauffmann, B., Huc, I.
| Funding Organization | Location | Grant Number |
|---|---|---|
| European Research Council | France | ERC-2012-AdG-320892 |
