6GJI

Cyclophilin A complexed with the tri-vector ligand 8.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.153 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A computationally designed binding mode flip leads to a novel class of potent tri-vector cyclophilin inhibitors

De Simone, A.Georgiou, C.Ioannidis, H.Gupta, A.A.Jimenez, J.J.Shenton, D.D.Blackburn, E.A.Wear, M.A.Walkinshaw, M.D.Hulme, A.N.Michel, J.

(2018) Chem Sci --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Peptidyl-prolyl cis-trans isomerase A
A
165Homo sapiensMutation(s): 0 
Gene Names: PPIA (CYPA)
EC: 5.2.1.8
Find proteins for P62937 (Homo sapiens)
Go to Gene View: PPIA
Go to UniProtKB:  P62937
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
F1E
Query on F1E

Download SDF File 
Download CCD File 
A
ethyl 2-[[(4-aminophenyl)methyl-[(1-methyl-1,2,3-triazol-4-yl)methyl]carbamoyl]amino]ethanoate
C16 H22 N6 O3
GPGRCPHGBRLBEI-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.191 
  • R-Value Work: 0.153 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 42.621α = 90.00
b = 54.535β = 90.00
c = 87.486γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACphasing
REFMACrefinement
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research CouncilUnited KingdomNo. 336289

Revision History 

  • Version 1.0: 2018-11-07
    Type: Initial release