6G8A

Lysozyme solved by Native SAD from a dataset collected in 5 seconds at 1 A wavelength with JUNGFRAU detector


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.143 Å
  • R-Value Free: 0.130 
  • R-Value Work: 0.112 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Fast and accurate data collection for macromolecular crystallography using the JUNGFRAU detector.

Leonarski, F.Redford, S.Mozzanica, A.Lopez-Cuenca, C.Panepucci, E.Nass, K.Ozerov, D.Vera, L.Olieric, V.Buntschu, D.Schneider, R.Tinti, G.Froejdh, E.Diederichs, K.Bunk, O.Schmitt, B.Wang, M.

(2018) Nat. Methods 15: 799-804


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
C
129Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
C
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
C
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.143 Å
  • R-Value Free: 0.130 
  • R-Value Work: 0.112 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 78.903α = 90.00
b = 78.903β = 90.00
c = 36.941γ = 90.00
Software Package:
Software NamePurpose
SHELXEmodel building
PHENIXrefinement
XDSdata reduction
SHELXCDphasing
CRANK2phasing
XDSdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-01
    Type: Initial release
  • Version 1.1: 2018-10-24
    Type: Data collection, Database references