6G4R

Corynebacterium glutamicum OxyR C206S mutant, H2O2-bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2sensing.

Pedre, B.Young, D.Charlier, D.Mourenza, A.Rosado, L.A.Marcos-Pascual, L.Wahni, K.Martens, E.G de la Rubia, A.Belousov, V.V.Mateos, L.M.Messens, J.

(2018) Proc. Natl. Acad. Sci. U.S.A. 115: E11623-E11632


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Hydrogen peroxide-inducible genes activator
B
327Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)Mutation(s): 1 
Find proteins for Q8NP91 (Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025))
Go to UniProtKB:  Q8NP91
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Hydrogen peroxide-inducible genes activator
A, G
327Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)Mutation(s): 1 
Find proteins for Q8NP91 (Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025))
Go to UniProtKB:  Q8NP91
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Hydrogen peroxide-inducible genes activator
E
327Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)Mutation(s): 1 
Find proteins for Q8NP91 (Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025))
Go to UniProtKB:  Q8NP91
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
PEO
Query on PEO

Download SDF File 
Download CCD File 
B, E
HYDROGEN PEROXIDE
H2 O2
MHAJPDPJQMAIIY-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  3 Unique
IDChainsTypeFormula2D DiagramParent
CSO
Query on CSO
B
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
CSD
Query on CSD
A, E, G
L-PEPTIDE LINKINGC3 H7 N O4 SCYS
OCS
Query on OCS
B
L-PEPTIDE LINKINGC3 H7 N O5 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.62 Å
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 71.216α = 90.00
b = 56.991β = 98.02
c = 154.182γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XDSdata reduction
PDB_EXTRACTdata extraction
Aimlessdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateBelgiumHERC16
Other governmentBelgiumG.0D79.14N
Other privateBelgiumSRP34
Other privateSpainLE326U14
Other privateSpainUXXI2016/00127

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release
  • Version 1.1: 2018-12-19
    Type: Data collection, Database references