6G0L

Structure of two molecules of the chromatin remodelling enzyme Chd1 bound to a nucleosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.5 of the entry. See complete history

Literature

Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome.

Sundaramoorthy, R.Hughes, A.L.El-Mkami, H.Norman, D.G.Ferreira, H.Owen-Hughes, T.

(2018) Elife 7: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Histone H3
A, E
136Xenopus laevisMutation(s): 0 
Gene Names: hist1h3g (H3l)
Find proteins for Q92133 (Xenopus laevis)
Go to UniProtKB:  Q92133
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Histone H4
B, F
103Xenopus laevisMutation(s): 0 
Find proteins for P62799 (Xenopus laevis)
Go to UniProtKB:  P62799
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Histone H2A type 1
C
130Xenopus laevisMutation(s): 0 
Find proteins for P06897 (Xenopus laevis)
Go to UniProtKB:  P06897
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Histone H4
D, H
126Xenopus laevisMutation(s): 0 
Find proteins for A0A1L8G0X3 (Xenopus laevis)
Go to UniProtKB:  A0A1L8G0X3
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Histone H2A type 1
G
130Xenopus laevisMutation(s): 0 
Find proteins for P06897 (Xenopus laevis)
Go to UniProtKB:  P06897
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
Chromo domain-containing protein 1
M, W
1468Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: CHD1
EC: 3.6.4.-
Find proteins for P32657 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to Gene View: CHD1
Go to UniProtKB:  P32657
Entity ID: 6
MoleculeChainsLengthOrganism
DNA (176-MER)I176synthetic construct
Entity ID: 7
MoleculeChainsLengthOrganism
DNA (177-MER)J177synthetic construct
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ADP
Query on ADP

Download SDF File 
Download CCD File 
M, W
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
BEF
Query on BEF

Download SDF File 
Download CCD File 
M, W
BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--

Revision History 

  • Version 1.0: 2018-08-22
    Type: Initial release
  • Version 1.1: 2018-08-29
    Type: Data collection, Database references
  • Version 1.2: 2018-09-12
    Type: Data collection, Data processing
  • Version 1.3: 2018-10-03
    Type: Data collection, Refinement description
  • Version 1.4: 2018-10-24
    Type: Advisory, Data collection, Derived calculations
  • Version 1.5: 2018-11-21
    Type: Advisory, Data collection, Derived calculations