6G03 | pdb_00006g03

NMR Solution Structure of yeast TSR2(1-152)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 6G03

This is version 1.3 of the entry. See complete history

Literature

Molecular basis for disassembly of an importin:ribosomal protein complex by the escortin Tsr2.

Schutz, S.Michel, E.Damberger, F.F.Oplova, M.Pena, C.Leitner, A.Aebersold, R.Allain, F.H.Panse, V.G.

(2018) Nat Commun 9: 3669-3669

  • DOI: https://doi.org/10.1038/s41467-018-06160-x
  • Primary Citation Related Structures: 
    6G03, 6G04

  • PubMed Abstract: 

    Disordered extensions at the termini and short internal insertions distinguish eukaryotic ribosomal proteins (r-proteins) from their anucleated archaeal counterparts. Here, we report an NMR structure of such a eukaryotic-specific segment (ESS) in the r-protein eS26 in complex with the escortin Tsr2. The structure reveals how ESS attracts Tsr2 specifically to importin:eS26 complexes entering the nucleus in order to trigger non-canonical RanGTP-independent disassembly. Tsr2 then sequesters the released eS26 and prevents rebinding to the importin, providing an alternative allosteric mechanism to terminate the process of nuclear import. Notably, a Diamond-Blackfan anemia-associated Tsr2 mutant protein is impaired in binding to ESS, unveiling a critical role for this interaction in human hematopoiesis. We propose that eS26-ESS and Tsr2 are components of a nuclear sorting system that co-evolved with the emergence of the nucleocytoplasmic barrier and transport carriers.


  • Organizational Affiliation
    • Institute of Medical Microbiology, University of Zurich, 8006, Zurich, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 17.94 kDa 
  • Atom Count: 1,261 
  • Modeled Residue Count: 156 
  • Deposited Residue Count: 156 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Pre-rRNA-processing protein TSR2156Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: TSR2YLR435W
UniProt
Find proteins for Q06672 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q06672 
Go to UniProtKB:  Q06672
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ06672
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research CouncilEURIBIO260676

Revision History  (Full details and data files)

  • Version 1.0: 2018-09-19
    Type: Initial release
  • Version 1.1: 2019-05-08
    Changes: Data collection
  • Version 1.2: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.3: 2024-06-19
    Changes: Data collection, Database references