6FUZ

Crystal structure of the TPR domain of KLC1 in complex with the C-terminal peptide of JIP1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.233 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Structural basis for isoform-specific kinesin-1 recognition of Y-acidic cargo adaptors.

Pernigo, S.Chegkazi, M.S.Yip, Y.Y.Treacy, C.Glorani, G.Hansen, K.Politis, A.Bui, S.Dodding, M.P.Steiner, R.A.

(2018) Elife 7: --

  • DOI: 10.7554/eLife.38362
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The light chains (KLCs) of the heterotetrameric microtubule motor kinesin-1, that bind to cargo adaptor proteins and regulate its activity, have a capacity to recognize short peptides via their tetratricopeptide repeat domains (KLC <sup>TPR </sup>). ...

    The light chains (KLCs) of the heterotetrameric microtubule motor kinesin-1, that bind to cargo adaptor proteins and regulate its activity, have a capacity to recognize short peptides via their tetratricopeptide repeat domains (KLC TPR ). Here, using X-ray crystallography, we show how kinesin-1 recognizes a novel class of adaptor motifs that we call 'Y-acidic' (tyrosine flanked by acidic residues), in a KLC-isoform-specific manner. Binding specificities of Y-acidic motifs (present in JIP1 and in TorsinA) to KLC1 TPR are distinct from those utilized for the recognition of W-acidic motifs, found in adaptors, that are KLC-isoform non-selective. However, a partial overlap on their receptor-binding sites implies that adaptors relying on Y-acidic and W-acidic motifs must act independently. We propose a model to explain why these two classes of motifs that bind to the concave surface of KLC TPR with similar low micromolar affinity can exhibit different capacities to promote kinesin-1 activity.


    Related Citations: 
    • Structural basis for kinesin-1:cargo recognition.
      Pernigo, S.,Lamprecht, A.,Steiner, R.A.,Dodding, M.P.
      (2013) Science 340: 356


    Organizational Affiliation

    Department of Chemistry, King's College London, London, United Kingdom.,Randall Centre of Cell and Molecular Biophysics, Faculty of Life Sciences and Medicine, King's College London, London, United Kingdom.,School of Biochemistry, Faculty of Life Sciences, University of Bristol, Bristol, United Kingdom.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Kinesin light chain 1,Kinesin light chain 1,C-Jun-amino-terminal kinase-interacting protein 1
A
337Mus musculusHomo sapiens
This entity is chimeric
Mutation(s): 0 
Gene Names: Klc1 (Kns2), MAPK8IP1 (IB1, JIP1, PRKM8IP)
Find proteins for O88447 (Mus musculus)
Go to UniProtKB:  O88447
Find proteins for Q9UQF2 (Homo sapiens)
Go to Gene View: MAPK8IP1
Go to UniProtKB:  Q9UQF2
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
nanobody
N
121N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
N
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.233 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 107.473α = 90.00
b = 90.364β = 99.80
c = 51.698γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PHASERphasing
XDSdata reduction
BUSTERrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/L006774/1

Revision History 

  • Version 1.0: 2018-05-02
    Type: Initial release
  • Version 1.1: 2018-09-12
    Type: Data collection, Database references, Source and taxonomy
  • Version 1.2: 2019-09-18
    Type: Data collection, Database references