6FTR

Serial Femtosecond Crystallography at Megahertz pulse rates


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.155 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Megahertz serial crystallography.

Wiedorn, M.O.Oberthur, D.Bean, R.Schubert, R.Werner, N.Abbey, B.Aepfelbacher, M.Adriano, L.Allahgholi, A.Al-Qudami, N.Andreasson, J.Aplin, S.Awel, S.Ayyer, K.Bajt, S.Barak, I.Bari, S.Bielecki, J.Botha, S.Boukhelef, D.Brehm, W.Brockhauser, S.Cheviakov, I.Coleman, M.A.Cruz-Mazo, F.Danilevski, C.Darmanin, C.Doak, R.B.Domaracky, M.Dorner, K.Du, Y.Fangohr, H.Fleckenstein, H.Frank, M.Fromme, P.Ganan-Calvo, A.M.Gevorkov, Y.Giewekemeyer, K.Ginn, H.M.Graafsma, H.Graceffa, R.Greiffenberg, D.Gumprecht, L.Gottlicher, P.Hajdu, J.Hauf, S.Heymann, M.Holmes, S.Horke, D.A.Hunter, M.S.Imlau, S.Kaukher, A.Kim, Y.Klyuev, A.Knoska, J.Kobe, B.Kuhn, M.Kupitz, C.Kupper, J.Lahey-Rudolph, J.M.Laurus, T.Le Cong, K.Letrun, R.Xavier, P.L.Maia, L.Maia, F.R.N.C.Mariani, V.Messerschmidt, M.Metz, M.Mezza, D.Michelat, T.Mills, G.Monteiro, D.C.F.Morgan, A.Muhlig, K.Munke, A.Munnich, A.Nette, J.Nugent, K.A.Nuguid, T.Orville, A.M.Pandey, S.Pena, G.Villanueva-Perez, P.Poehlsen, J.Previtali, G.Redecke, L.Riekehr, W.M.Rohde, H.Round, A.Safenreiter, T.Sarrou, I.Sato, T.Schmidt, M.Schmitt, B.Schonherr, R.Schulz, J.Sellberg, J.A.Seibert, M.M.Seuring, C.Shelby, M.L.Shoeman, R.L.Sikorski, M.Silenzi, A.Stan, C.A.Shi, X.Stern, S.Sztuk-Dambietz, J.Szuba, J.Tolstikova, A.Trebbin, M.Trunk, U.Vagovic, P.Ve, T.Weinhausen, B.White, T.A.Wrona, K.Xu, C.Yefanov, O.Zatsepin, N.Zhang, J.Perbandt, M.Mancuso, A.P.Betzel, C.Chapman, H.Barty, A.

(2018) Nat Commun 9: 4025-4025


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lysozyme C
A
129Gallus gallusMutation(s): 0 
Gene Names: LYZ
EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus)
Go to Gene View: LYZ
Go to UniProtKB:  P00698
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download SDF File 
Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.76 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.155 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 79.300α = 90.00
b = 79.300β = 90.00
c = 37.730γ = 90.00
Software Package:
Software NamePurpose
CrystFELdata reduction
PHASERphasing
PHENIXrefinement
CrystFELdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-10
    Type: Initial release
  • Version 1.1: 2018-10-17
    Type: Data collection, Database references, Structure summary
  • Version 1.2: 2018-11-14
    Type: Data collection, Structure summary