6FQQ

Crystal structure of TALE homeobox domain transcription factor TGIF1 double alanine mutant bound to its consensus DNA

  • Classification: TRANSCRIPTION
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): 

  • Deposited: 2018-02-14 Released: 2018-07-25 
  • Deposition Author(s): Guca, E., Macias, M.J.
  • Funding Organization(s): Spanish Ministry of Economy and Competitiveness; COFUND Marie Sklodowska Curie 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.215 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of TALE homeobox domain transcription factor TGIF1 with its consensus DNA

Guca, E.Macias, M.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Homeobox protein TGIF1
A, B, D, E
71Homo sapiensMutation(s): 2 
Gene Names: TGIF1 (TGIF)
Find proteins for Q15583 (Homo sapiens)
Go to Gene View: TGIF1
Go to UniProtKB:  Q15583
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*AP*TP*TP*GP*AP*CP*AP*GP*CP*TP*GP*TP*CP*AP*AP*T)-3')L,M,G,H16Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.215 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 60.058α = 90.00
b = 93.016β = 90.00
c = 100.711γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
phenix.refinerefinement
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-02-14 
  • Released Date: 2018-07-25 
  • Deposition Author(s): Guca, E., Macias, M.J.

Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBFU2014-53787P
COFUND Marie Sklodowska CurieSpainIRBPostPro2.0 600404

Revision History 

  • Version 1.0: 2018-07-25
    Type: Initial release