6FQP

Crystal structure of TALE homeobox domain transcription factor TGIF1 with its consensus DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.205 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of TALE homeobox domain transcription factor TGIF1 with its consensus DNA

Guca, E.Macias, M.J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Homeobox protein TGIF1
A, B
101Homo sapiensMutation(s): 0 
Gene Names: TGIF1 (TGIF)
Find proteins for Q15583 (Homo sapiens)
Go to Gene View: TGIF1
Go to UniProtKB:  Q15583
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(P*AP*TP*TP*GP*AP*CP*AP*GP*CP*TP*GP*TP*CP*AP*AP*T)-3')L,M16Homo sapiens
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
L
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.205 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 50.851α = 90.00
b = 67.248β = 90.00
c = 102.315γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACrefinement
XDSdata reduction
PHASERphasing
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-02-14 
  • Released Date: 2018-07-25 
  • Deposition Author(s): Guca, E., Macias, M.J.

Funding OrganizationLocationGrant Number
Spanish Ministry of Economy and CompetitivenessSpainBFU2014-53787-P
COFUND Marie Sklodowska CurieSpainIRBPostPro2.0 600404

Revision History 

  • Version 1.0: 2018-07-25
    Type: Initial release