6FQB

MurT/GatD peptidoglycan amidotransferase complex from Streptococcus pneumoniae R6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structure of the essential peptidoglycan amidotransferase MurT/GatD complex from Streptococcus pneumoniae.

Morlot, C.Straume, D.Peters, K.Hegnar, O.A.Simon, N.Villard, A.M.Contreras-Martel, C.Leisico, F.Breukink, E.Gravier-Pelletier, C.Le Corre, L.Vollmer, W.Pietrancosta, N.Havarstein, L.S.Zapun, A.

(2018) Nat Commun 9: 3180-3180


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Mur ligase family protein
A, B, C, D
465Streptococcus pneumoniae (strain ATCC BAA-255 / R6)Mutation(s): 0 
Find proteins for Q8DNZ9 (Streptococcus pneumoniae (strain ATCC BAA-255 / R6))
Go to UniProtKB:  Q8DNZ9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Cobyric acid synthase
E, F, G, H
260Streptococcus pneumoniae (strain ATCC BAA-255 / R6)Mutation(s): 0 
Gene Names: cobQ
Find proteins for Q8DNZ8 (Streptococcus pneumoniae (strain ATCC BAA-255 / R6))
Go to UniProtKB:  Q8DNZ8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GLN
Query on GLN

Download SDF File 
Download CCD File 
E, F, G, H
GLUTAMINE
C5 H10 N2 O3
ZDXPYRJPNDTMRX-VKHMYHEASA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3 Å
  • R-Value Free: 0.228 
  • R-Value Work: 0.189 
  • Space Group: H 3
Unit Cell:
Length (Å)Angle (°)
a = 288.430α = 90.00
b = 288.430β = 90.00
c = 115.100γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
REFMACrefinement
XSCALEdata scaling
SHARPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
INSERM-Astra ZenecaFrance--

Revision History 

  • Version 1.0: 2018-08-22
    Type: Initial release
  • Version 1.1: 2018-11-07
    Type: Data collection