6FN0

The animal-like Cryptochrome from Chlamydomonas reinhardtii in complex with 6-4 DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.157 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii.

Franz, S.Ignatz, E.Wenzel, S.Zielosko, H.Putu, E.P.G.N.Maestre-Reyna, M.Tsai, M.D.Yamamoto, J.Mittag, M.Essen, L.O.

(2018) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cryptochrome photoreceptor
A
499Chlamydomonas reinhardtiiMutation(s): 0 
Gene Names: UVR3
Find proteins for A8J8W0 (Chlamydomonas reinhardtii)
Go to UniProtKB:  A8J8W0
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*AP*GP*CP*GP*GP*(64T)P*(5PY)P*GP*CP*CP*GP*TP*G)-3')C14Chlamydomonas reinhardtii
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*AP*CP*GP*GP*CP*AP*AP*CP*CP*GP*CP*TP*G)-3')D14Chlamydomonas reinhardtii
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

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D
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
FAD
Query on FAD

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A
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
GOL
Query on GOL

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A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

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C
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
1PE
Query on 1PE

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D
PENTAETHYLENE GLYCOL
PEG400
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
MES
Query on MES

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A
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
64T
Query on 64T
C
DNA LINKINGC10 H17 N2 O9 PDT
5PY
Query on 5PY
C
DNA LINKINGC10 H15 N2 O7 PDT
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.157 
  • Space Group: P 42 21 2
Unit Cell:
Length (Å)Angle (°)
a = 146.240α = 90.00
b = 146.240β = 90.00
c = 67.440γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research FoundationGermanyFOR 1261-2

Revision History 

  • Version 1.0: 2018-08-01
    Type: Initial release