Structural basis of semaphorin-plexin cis interaction
Rozbesky, D., Karia, D., Alvarez, L., Harlos, K., Padilla-Parra, S., Jones, E.Y.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
Plexin A, isoform A | A, C | 715 | Drosophila melanogaster | Mutation(s): 0  Gene Names: PlexA (BcDNA:GM05237, D-Plex A, Dmel\CG11081, DPlexA, lincRNA.927, plex, plex A, Plex1, plexA, PlexA1) |
Find proteins for Q9V491 (Drosophila melanogaster) Go to UniProtKB:  Q9V491 |
Entity ID: 2 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
MIP07328p | B, D | 578 | Drosophila melanogaster | Mutation(s): 0  Gene Names: Sema1b (BcDNA:GH03186, D-semaIII, Dmel\CG6446, Sema 1b, Sema III, Sema-1b, Sema-1b-RB, sema-III, sema1b, semaphorin-like) |
Find proteins for Q7KK54 (Drosophila melanogaster) Go to UniProtKB:  Q7KK54 |
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MAN Query on MAN | B, D | ALPHA-D-MANNOSE C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N | ![]() |  Ligand Interaction | |
BMA Query on BMA | B, D | BETA-D-MANNOSE C6 H12 O6 WQZGKKKJIJFFOK-RWOPYEJCSA-N | ![]() |  Ligand Interaction | |
NAG Query on NAG | A, B, C, D | N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | ![]() |  Ligand Interaction |
Length (Å) | Angle (°) |
---|---|
a = 153.630 | α = 90.00 |
b = 153.630 | β = 90.00 |
c = 425.370 | γ = 120.00 |
Software Name | Purpose |
---|---|
xia2 | data reduction |
PHASER | phasing |
xia2 | data scaling |
PHENIX | refinement |
Funding Organization | Location | Grant Number |
---|---|---|
Cancer Research UK | United Kingdom | B5R00120 |