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Download EndnoteStructural basis of semaphorin-plexin cis interaction
Rozbesky, D., Karia, D., Alvarez, L., Harlos, K., Padilla-Parra, S., Jones, E.Y.To be published.
6FKN
Drosophila Plexin A in complex with Semaphorin 1b
- DOI: 10.2210/pdb6FKN/pdb
- Classification: SIGNALING PROTEIN
- Organism(s): Drosophila melanogaster
- Expression System: Homo sapiens
- Deposited: 2018-01-24 Released: 2019-02-06
- Funding Organization(s): Cancer Research UK
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 4.801 Å
- R-Value Free: 0.297
- R-Value Work: 0.285
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Plexin A, isoform A | A, C | 715 | Drosophila melanogaster | Mutation(s): 0 Gene Names: PlexA (BcDNA:GM05237, D-Plex A, Dmel\CG11081, DPlexA, lincRNA.927, plex, plex A, Plex1, plexA, PlexA1) |
Find proteins for Q9V491 (Drosophila melanogaster) Go to UniProtKB: Q9V491 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| MIP07328p | B, D | 578 | Drosophila melanogaster | Mutation(s): 0 Gene Names: Sema1b (BcDNA:GH03186, D-semaIII, Dmel\CG6446, Sema 1b, Sema III, Sema-1b, Sema-1b-RB, sema-III, sema1b, semaphorin-like) |
Find proteins for Q7KK54 (Drosophila melanogaster) Go to UniProtKB: Q7KK54 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MAN Query on MAN | B, D | ALPHA-D-MANNOSE C6 H12 O6 WQZGKKKJIJFFOK-PQMKYFCFSA-N |  | Ligand Interaction | |
| BMA Query on BMA | B, D | BETA-D-MANNOSE C6 H12 O6 WQZGKKKJIJFFOK-RWOPYEJCSA-N |  | Ligand Interaction | |
| NAG Query on NAG | A, B, C, D | N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 4.801 Å
- R-Value Free: 0.297
- R-Value Work: 0.285
- Space Group: P 65 2 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 153.630 | α = 90.00 |
| b = 153.630 | β = 90.00 |
| c = 425.370 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| xia2 | data reduction |
| PHASER | phasing |
| xia2 | data scaling |
| PHENIX | refinement |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2018-01-24
- Released Date: 2019-02-06
- Deposition Author(s): Rozbesky, D., Harlos, K., Jones, E.Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Cancer Research UK | United Kingdom | B5R00120 |
Revision History
- Version 1.0: 2019-02-06
Type: Initial release
