6FI8

Crystal structure of the IS608 transposase in complex with left end 29-mer DNA hairpin and a 6-mer DNA representing the intact target site: pre-cleavage target capture complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.598 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Targeting IS608 transposon integration to highly specific sequences by structure-based transposon engineering.

Morero, N.R.Zuliani, C.Kumar, B.Bebel, A.Okamoto, S.Guynet, C.Hickman, A.B.Chandler, M.Dyda, F.Barabas, O.

(2018) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Putative transposase
A, B, G, H
159Helicobacter pylori
Find proteins for Q933Z0 (Helicobacter pylori)
Go to UniProtKB:  Q933Z0
Entity ID: 2
MoleculeChainsLengthOrganism
DNA 29-MER (LE29)C,D,I,J29Helicobacter pylori
Entity ID: 3
MoleculeChainsLengthOrganism
DNA 6-MER (T6')E,F,K,L6Helicobacter pylori
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, C, D, F, G, H, I, J, K
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.598 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.197 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 138.640α = 90.00
b = 138.640β = 90.00
c = 117.950γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
XDSdata reduction
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-03-28
    Type: Initial release
  • Version 1.1: 2018-04-18
    Type: Data collection, Database references