6FI8 | pdb_00006fi8

Crystal structure of the IS608 transposase in complex with left end 29-mer DNA hairpin and a 6-mer DNA representing the intact target site: pre-cleavage target capture complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Transposase IS200-like	8037527	3001347	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Transposase IS200-like	8037527	3001347	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Transposase IS200-like	8037527	3001347	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Transposase IS200-like	8037527	3001347	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Y1_Tnp	e6fi8H1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Transposase IS200-like	F: Y1_Tnp	ECOD (1.6)
G	Y1_Tnp	e6fi8G1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Transposase IS200-like	F: Y1_Tnp	ECOD (1.6)
B	Y1_Tnp	e6fi8B1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Transposase IS200-like	F: Y1_Tnp	ECOD (1.6)
A	Y1_Tnp	e6fi8A1	A: a+b two layers	X: Alpha-beta plaits	H: Origin of replication-binding domains	T: Transposase IS200-like	F: Y1_Tnp	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (utative)
G	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (utative)
B	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (utative)
A	3.30.70.1290	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Transposase IS200-like	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, G, H	PF01797	Transposase IS200 like (Y1_Tnp)	Transposase IS200 like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, G, H	Putative transposase	DNA binding binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding transposase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid catalytic activity	nucleobase-containing compound metabolic process DNA recombination cellular process metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process transposition DNA transposition nucleic acid metabolic process	-
C, D, I, J	DNA 29-MER (LE29)	-	-	-
E, F, K, L	DNA 6-MER (T6')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, G, H	IPR036515	Transposase IS200-like superfamily	Homologous Superfamily
A, B, G, H	IPR002686	Transposase IS200-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.