6F2S

CryoEM structure of Ageratum Yellow Vein virus (AYVV)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The 3.3 angstrom structure of a plant geminivirus using cryo-EM.

Hesketh, E.L.Saunders, K.Fisher, C.Potze, J.Stanley, J.Lomonossoff, G.P.Ranson, N.A.

(2018) Nat Commun 9: 2369-2369


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Capsid protein
A, B, F, E, D, C, K, J, G
195Ageratum yellow vein virusMutation(s): 0 
Gene Names: V1
Find proteins for W5RUR4 (Ageratum yellow vein virus)
Go to UniProtKB:  W5RUR4
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
coat protein subunit I
I
203Ageratum yellow vein virusMutation(s): 0 
Gene Names: V1
Find proteins for W5RUR4 (Ageratum yellow vein virus)
Go to UniProtKB:  W5RUR4
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
coat protein subunit H
H
218Ageratum yellow vein virusMutation(s): 0 
Gene Names: V1
Find proteins for W5RUR4 (Ageratum yellow vein virus)
Go to UniProtKB:  W5RUR4
Entity ID: 2
MoleculeChainsLengthOrganism
ssDNA loopL,M,Q,P,O,N,V,U,T,R7Ageratum yellow vein virus
Entity ID: 5
MoleculeChainsLengthOrganism
ssDNA loop associated with subunit HS6Ageratum yellow vein virus
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/L021250/1
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/L020955/1
Wellcome TrustUnited Kingdom108466/Z/15/Z
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/J004596/1
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/P012523/1

Revision History 

  • Version 1.0: 2018-06-27
    Type: Initial release
  • Version 1.1: 2018-07-04
    Type: Data collection, Database references
  • Version 1.2: 2018-10-17
    Type: Data collection, Refinement description