Biological Assembly 1  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: authors reported there is no experimental evidence

Biological Assembly 2  

 3D View: Structure | Electron Density | Ligand Interaction

Standalone Viewers  
Protein Workshop | Ligand Explorer

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 88186.36 
• Atom Count: 5927 
• Residue Count: 746 
• Unique protein chains: 1

6EJI

Structure of a glycosyltransferase

• DOI: 10.2210/pdb6EJI/pdb

• Classification: TRANSFERASE
• Organism(s): Campylobacter jejuni
• Expression System: Escherichia coli


• Deposited: 2017-09-21 Released: 2018-02-07 
• Deposition Author(s): Ramirez, A.S., Boilevin, J., Mehdipour, A.R., Hummer, G., Darbre, T., Reymond, J.L., Locher, K.P.
• Funding Organization(s): null 

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.3 Å
• R-Value Free: 0.223 
• R-Value Work: 0.196 

Literature

Structural basis of the molecular ruler mechanism of a bacterial glycosyltransferase.

Ramirez, A.S., Boilevin, J., Mehdipour, A.R., Hummer, G., Darbre, T., Reymond, J.L., Locher, K.P.

(2018) Nat Commun 9: 445-445

• PubMed: 29386647 
• Primary Citation of Related Structures:  
  6EJK, 6EJJ

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
WlaC protein	A, B	373	Campylobacter jejuni	Mutation(s): 0  Gene Names: wlaC
Membrane protein mpstruct	Group:  MONOTOPIC MEMBRANE PROTEINS		Sub Group:  Glycosyltransferases	Protein:  PglH glycosyltransferase in complex with UDP-galNAc
Find proteins for O86151 (Campylobacter jejuni) Go to UniProtKB:  O86151

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions
K	A, B	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N
NA	A, B	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N
CL	A, B	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
GOL	A, B	GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
UD2	A, B	URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE (2R,3R,4R,5R,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate C17 H27 N3 O17 P2 LFTYTUAZOPRMMI-NESSUJCYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.3 Å
• R-Value Free: 0.223 
• R-Value Work: 0.196 
• Space Group: P 1 2₁ 1

Unit Cell:

Length (Å)	Angle (°)
a = 61.620	α = 90.00
b = 127.030	β = 90.13
c = 71.580	γ = 90.00

Software Package:

Software Name	Purpose
CRANK2	phasing
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling

Structure Validation

Entry History & Funding Information

Deposition Data

• Deposited Date: 2017-09-21 
• Released Date: 2018-02-07 
• Deposition Author(s): Ramirez, A.S., Boilevin, J., Mehdipour, A.R., Hummer, G., Darbre, T., Reymond, J.L., Locher, K.P.

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Funding Organization	Location	Grant Number
	Switzerland	--

Revision History 

• Version 1.0: 2018-02-07
  Type: Initial release
• Version 1.1: 2018-02-14
  Type: Database references