6EF6

Structure of the microcompartment-associated aminopropanol kinase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.149 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural and kinetic characterization of (S)-1-amino-2-propanol kinase from the aminoacetone utilization microcompartment ofMycobacterium smegmatis.

Mallette, E.Kimber, M.S.

(2018) J.Biol.Chem. 293: 19909-19918

  • DOI: 10.1074/jbc.RA118.005485

  • PubMed Abstract: 
  • Bacterial microcompartments encapsulate enzymatic pathways that generate small, volatile, aldehyde intermediates. The <i>Rhodococcus </i> and <i>Mycobacterium </i> microcompartment (RMM) operon from <i>Mycobacterium smegmatis </i> encodes four enz ...

    Bacterial microcompartments encapsulate enzymatic pathways that generate small, volatile, aldehyde intermediates. The Rhodococcus and Mycobacterium microcompartment (RMM) operon from Mycobacterium smegmatis encodes four enzymes, including ( S )-1-amino-2-propanol dehydrogenase and a likely propionaldehyde dehydrogenase. We show here that a third enzyme (and its nonmicrocompartment-associated paralog) is a moderately specific ( S )-1-amino-2-propanol kinase. We determined the structure of apo-aminopropanol kinase at 1.35 Å, revealing that it has structural similarity to hexosamine kinases, choline kinases, and aminoglycoside phosphotransferases. We modeled substrate binding, and tested our model by characterizing key enzyme variants. Bioinformatics analysis established that this enzyme is widespread in Actinobacteria, Proteobacteria, and Firmicutes, and is very commonly associated with a candidate phospholyase. In Rhizobia, aminopropanol kinase is generally associated with aromatic degradation pathways. In the RMM (and the parallel pathway that includes the second paralog), aminopropanol kinase likely degrades aminoacetone through a propanolamine-phosphate phospho-lyase-dependent pathway. These enzymatic activities were originally described in Pseudomonas , but the proteins responsible have not been previously identified. Bacterial microcompartments typically co-encapsulate enzymes which can regenerate required co-factors, but the RMM enzymes require four biochemically distinct co-factors with no overlap. This suggests that either the RMM shell can uniquely transport multiple co-factors in stoichiometric quantities, or that all enzymes except the phospho-lyase reside outside of the shell. In summary, aminopropanol kinase is a novel enzyme found in diverse bacteria and multiple metabolic pathways; its presence in the RMM implies that this microcompartment degrades aminoacetone, using a pathway that appears to violate some established precepts as to how microcompartments function.


    Organizational Affiliation

    University of Oxford, Structural Genetics Consortium, ORCRB, Old Road Campus, OX3 7DQ, Oxford, UNITED KINGDOM.,College of Physics and Information Science, Synergetic Innovation Center for Quantum Effects and Applications, Hunan Normal University, Changsha, 410081, Hunan, China. xiangxi@ibp.ac.cn hrliu@hunnu.edu.cn xzzhang@ibp.ac.cn wangjz@nicpbp.org.cn raozh@tsinghua.edu.cn.,The RIKEN SPring-8 Center, 1-1-1 Koto, Sayo-cho, Sato-gun, Hyogo, 678-5248, Japan.,Affiliated Cancer Hospital and Institute of Guangzhou Medical University , Guangzhou , Guangdong 511436 , China.,University of Basel, Biozentrum, CH-4056, Basel, Switzerland.,Department of Pharmaceutical Sciences, College of Pharmacy , University of Tennessee Health Science Center , Memphis , Tennessee 38163 , United States.,From the Departamento de Bioquímica, Facultad de Química and.,Department of Biochemistry, King Abdulaziz University, Jeddah, 21589, Saudi Arabia.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China; State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei 430070, China. Electronic address: hejin@mail.hzau.edu.cn.,Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw 02-106, Poland; Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Warsaw 02-776, Poland.,Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma (J.M.B., M.L.W., A.M.R., A.A.P.) and School of Biological Sciences, University of Auckland, Auckland, New Zealand (D.L.H.).,Departamento de Química, Universidad de La Rioja, Centro de Investigación en Síntesis Química, E-26006, Logroño, Spain.,the i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, 4200-135 Porto, Portugal, and.,Cambridge Graphene Centre, University of Cambridge, 9 JJ Thomson Avenue, Cambridge, CB3 OFA, UK.,Infection and Immunity Program, Department of Microbiology, Monash University, Clayton, 3800, Australia.,Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea. Electronic address: bwhan@snu.ac.kr.,Cardiovascular Research Institute, University of California at San Francisco, San Francisco, CA, USA. lijunliuks@gmail.com.,IGF, Univ Montpellier, CNRS, INSERM, 34090 Montpellier, France.,DLX Scientific, Lawrence, KS, USA. lijunliuks@gmail.com.,Howard Hughes Medical Institute, and Departments of Molecular and Cellular Physiology, and Structural Biology, Program in Immunology, Stanford University School of Medicine, Stanford, California, USA.,Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China. Electronic address: zoutingting@mail.hzau.edu.cn.,Department of Pharmaceutical Chemistry, University of Debrecen, 4032, Debrecen, Hungary.,Dept. of Biological Chemistry, John Innes Centre, Norwich Research Park, Norwich, United Kingdom.,Department of Anesthesiology, Stony Brook University, Stony Brook, NY, 11794-8480, United states.,Department of Immunology and Microbiology, University of Texas Medical Branch, Galveston, TX, USA.,Department of Pharmacy and Biotechnology, University of Bologna, Viale Giuseppe Fanin 40, 40127, Bologna, Italy.,Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università degli Studi di Parma, Parco Area delle Scienze 7/A, 43124, Parma, Italy.,NTU Institute of Structural Biology, Nanyang Technological University, Singapore, Singapore. sbhushan@ntu.edu.sg.,Cryo-EM Structural Biology Laboratory, Van Andel Research Institute, Grand Rapids, MI, 49503, United states.,Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA, USA. xiaokun.shu@ucsf.edu.,Research Center Borstel , Leibniz Lung Center , Parkallee 22 , Borstel D-23845 , Germany.,Key Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China zhaojund@126.com.,the State Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, ChangChun, Jilin 130022, China.,Department of Biology and Konstanz Research School Chemical Biology, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.,Biostructural Mechanism Laboratory, RIKEN, SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan.,Department of Molecular and Cellular Biology , University of Guelph , Guelph , Ontario N1G 2W1 , Canada.,National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China.,Department of Physiology and Pharmacology, Oregon Health & Science University, Portland, OR 97210, United States.,Adimab LLC, Lebanon, NH, USA.,Department of Biology, Southern University of Science and Technology, Shenzhen, China.,Astbury Centre for Structural and Molecular Biology, University of Leeds, LS2 9JT Leeds, United Kingdom.,Center for Computational Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan.,Departamento de Biología Comparada, Facultad de Ciencias, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510 Ciudad de México, México.,Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan.,Present address: Department of Chemical, Biological and Environmental Engineering, Bioprocess Engineering and Applied Biocatalysis Group, Engineering School, Campus de la UAB, 08193, Bellaterra (Cerdanyola del Vallés), Barcelona, Spain.,Department of Pharmaceutical Chemistry , University of California San Francisco , San Francisco , California 94158 , United States.,Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.,Program in Chemical Biology, Oregon Health & Science University, Portland, OR 97210, USA; Department of Physiology and Pharmacology, Oregon Health & Science University, Portland, OR 97210, United States.,School of Biological Sciences, Nanyang Technological University, Singapore, Singapore. sbhushan@ntu.edu.sg.,Galveston National Laboratory, University of Texas Medical Branch, Galveston, TX, USA.,Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università degli Studi di Parma, Parco Area delle Scienze 7/A, 43124, Parma, Italy. stefania.abbruzzetti@unipr.it.,Department of Molecular Medicine, University of South Florida Morsani College of Medicine, 12901 Bruce B. Downs Blvd., Tampa, Florida 33612, United States.,IHAP, Université de Toulouse, INRA, ENVT, Toulouse, France.,Swiss Light Source, Paul Scherrer Institute, Villigen, Switzerland.,State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300353, China.,Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,Key Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China.,Pharmaceutical Frontier Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-13-2, Fukuura, Kanazawa-Ku, Yokohama, Kanagawa, 236-0004, Japan. masato.noguchi@jt.com.,Institut de Biologie Structurale (IBS), Univ. Grenoble Alpes, CEA, CNRS, 38044, Grenoble, France.,National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.,School of Life Sciences, Jawaharlal Nehru University, New Delhi, India. Electronic address: sgourinath@mail.jnu.ac.in.,From the Institute for Protein Design, chris.bahl@proteininnovation.org.,the Institute for Protein Innovation, Boston, Massachusetts 02115.,Program in Chemical Biology, Oregon Health & Science University, Portland, OR 97210, USA; Department of Physiology and Pharmacology, Oregon Health & Science University, Portland, OR 97210, United States; European Molecular Biology Laboratory (EMBL), Cell Biology and Biophysics Unit, Meyerhofstrasse 1, 69117 Heidelberg, Germany.,Dipartimento di Scienze Chirurgiche, Università di Cagliari, Cagliari, 09100, Italy.,Institut für Biologie, Strukturbiologie/Biochemie, Humboldt-Universität zu Berlin, D-10099 Berlin, Germany holger.dobbek@biologie.hu-berlin.de.,CBS, Univ Montpellier, CNRS, INSERM, 34090 Montpellier, France. Electronic address: gilles.labesse@cbs.cnrs.fr.,Center for BioImaging Sciences, National University of Singapore, Singapore, Singapore.,Swiss Light Source, Paul Scherrer Institute, Villigen, Switzerland. bernd.schmitt@psi.ch.,Department of Biomedical Sciences (Unidad Asociada IQM,CSIC) and Instituto de Investigación Quimica "Andrés M. del Río" (IQAR), University of Alcalá, Unidad Asociada CSIC, 28805 Alcalá de Henares, Madrid, Spain.,Biostructural Mechanism Laboratory, RIKEN, SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan; Advanced Electron Microscope Development Unit, RIKEN-JEOL Collaboration Center, RIKEN Baton Zone Program, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan. Electronic address: yone@spring8.or.jp.,Department of Microbiology and Molecular Genetics, University of Vermont, Burlington, VT 05405, USA.,Department of Chemistry , University of California, Irvine , Irvine , California 92697-2025 , United States.,Department of Structural Biology, Weizmann Institute of Science, Rehovot, 7610001, Israel.,GSK Medicines Research Centre, Gunnels Wood Road, Stevenage, Hertfordshire, SG1 2NY, UK.,Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, 7-1 Kioi-cho, Chiyoda-ku, 102-8554, Tokyo, Japan.,From the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada mkimber@uoguelph.ca.,Institut National de la Santé et de la Recherche Médicale, Institut de Recherche en Infectiologie de Montpellier, Montpellier, France.,Cell and Molecular Sciences Group, Dundee Effector Consortium, James Hutton Institute, Invergowrie, Dundee, United Kingdom.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. peta.harvey@imb.uq.edu.au.,Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, 565-0871, Osaka, Japan.,Graduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa, Ishikawa, 920-1192, Japan.,Department of Pharmaceutical and Pharmacological Sciences, University of Padova, 35131 Padova, Italy.,Department of Therapeutic Radiology, Yale University School of Medicine, New Haven, CT 06520, USA.,Department of Chemistry , Box H, Brown University , Providence , Rhode Island 02912-9108 , United States.,CRBM, "Equipe Labellisée Ligue Contre le Cancer", Univ Montpellier, CNRS, 34000 Montpellier, France.,Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195.,Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.,Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden. dan.sjostrand@dbb.su.se.,School of Life Science, University of Science and Technology of China, Hefei, 230026, China.,School of Chemistry, University of Leeds, LS2 9JT Leeds, United Kingdom.,School of Life Sciences, Jawaharlal Nehru University, New Delhi, India.,Instituto de Biocomputación y Fisica de Sistemas Complejos (BIFI), BIFI-IQFR (CSIC) Joint Unit, Universidad de Zaragoza, 50018, Zaragoza, Spain.,National Institute of Public Health-National Institute of Hygiene, Chocimska 24, PL-00791, Warsaw, Poland.,Structural Genomics Consortium, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany.,Department of Biosciences and Nutrition, Karolinska Institutet, Hälsovägen 7c, 14157, Huddinge, Sweden.,Instituto de Química Médica (IQM,CSIC), Juan de la Cierva 3, 28006, Madrid, Spain.,Medicinal Bioconvergence Research Center, Seoul National University, Seoul 08826, Republic of Korea.,Faculty of Agriculture and Biology, Warsaw University of Life Sciences, Warsaw 02-776, Poland.,Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,the IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, 4200-135 Porto, Portugal.,Integrated Biotherapeutics, Rockville, MD, USA.,European Molecular Biology Laboratory (EMBL), Cell Biology and Biophysics Unit, Meyerhofstrasse 1, 69117 Heidelberg, Germany; EMBL, Heidelberg University, Heidelberg, Germany.,Department of Biothermodynamics and Drug Design, Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.,the Department of Biochemistry, Trinity College, Dublin 2, Ireland.,Institute of Low Temperature Science, Hokkaido University Kita19-Nishi8, Kita-ku, 060-0819, Sapporo, Japan.,Institut de biologie moléculaire des plantes, CNRS, Université de Strasbourg, Strasbourg Cedex, France.,Structural Proteomics Unit, Life Sciences Core Facilities, Weizmann Institute of Science, Rehovot, 7610001, Israel.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. nyoman.kurniawan@cai.uq.edu.au.,Howard Hughes Medical Institute, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York 10065, and.,Biomedical Sciences Research Complex, University of St. Andrews, St. Andrews, Fife, Scotland, KY16 9ST, UK.,Institut Pasteur de Montevideo, Mataojo 2020, 11400, Montevideo, Uruguay.,Department of Molecular Biology and Biotechnology, Firth Court, University of Sheffield, S10 2TN Sheffield, United Kingdom.,From the Departamento de Bioquímica, Facultad de Química and clares@unam.mx.,School of Biology, Faculty of Biology Medicine and Health, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK.,CBS, Univ Montpellier, CNRS, INSERM, 34090 Montpellier, France.,Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada V6T 1Z3; Department of Chemistry, University of British Columbia, Vancouver, BC, Canada V6T 1Z1.,Savaid Medical School, University of Chinese Academy of Sciences, Beijing, 101408, China.,School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, LS2 9JT Leeds, United Kingdom; s.p.muench@leeds.ac.uk.,Departments of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, 11794-5215, United states; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states.,Fundación ARAID, 50018, Zaragoza, Spain.,Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.,Department of Microbiology and Immunology, University of British Columbia, Vancouver, BC, Canada V6T 1Z3.,Department of Biology and Biotechnology 'L. Spallanzani', University of Pavia, 27100, Pavia, Italy.,Department of Chemistry , University of Natural Resources and Life Sciences , A-1190 Vienna , Austria.,Department of Biochemistry, and.,Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA, USA. william.degrado@ucsf.edu.,Department of Biology, Indiana University Bloomington, Bloomington, IN, 47405, USA.,Institute of Physical Science and Information Technology, Anhui University, 111 Jiulong Road, Hefei, Anhui 230601, People's Republic of China.,eBIC, Diamond Light Source Ltd, Diamond House, Harwell Science & Innovation Campus, Oxfordshire, Didcot, OX11 0DE, UK.,University of Chinese Academy of Sciences, Beijing, 101408, China.,NIST/IBBR, 9600 Gudelsky Drive, Rockville, MD 20850, USA.,Centro de Investigaciones Biológicas (CIB,CSIC), Ramiro de Maeztu 9, 28040, Madrid, Spain.,Howard Hughes Medical Institute, Department of Biochemistry, Brandeis University, Waltham, MA, 02454, USA.,Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Howard Hughes Medical Institute, Dallas, TX 75390, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,INRA, UMR1282 Infectiologie et Santé Publique, F-37380, Nouzilly, France.,Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, 11794-3600, United states.,Johnson & Johnson Pharmaceutical Research and Development, L.L.C, 3210 Merryfield Row, San Diego, California 92121, United States.,Guangzhou Eighth People's Hospital, Guangzhou Medical University, Guangzhou 510060, China.,Department of Molecular and System Pharmacology, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka, Japan.,German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120, Heidelberg, Germany.,Pharmaceutical Frontier Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-13-2, Fukuura, Kanazawa-Ku, Yokohama, Kanagawa, 236-0004, Japan. tsuyoshi.adachi@jt.com.,Department of Chemistry, Université de Montréal, C.P. 6128, Succursale Centre-Ville, Montréal, Québec, H3C 3J7, Canada.,Department of Chemistry, Biomedicinskt Centrum (BMC), Uppsala University, 751 23 Uppsala, Sweden.,New England Biolabs, 240 County Road, Ipswich, MA, 01938, USA.,Department of Nutrition, Food Sciences and Gastronomy, Faculty of Pharmacy and Food Sciences and Institute of Biomedicine (IBUB), University of Barcelona, Avda. Prat de la Riba 171, Santa Coloma de Gramenet, Spain.,Fachbereich Biologie, Universität Konstanz, Konstanz, Germany.,Mapp Biopharmaceutical, San Diego, CA, USA.,Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, School of Dentistry, University of Copenhagen, Copenhagen, Denmark.,Department of Industrial Biotechnology, Faculty of Agro-Industry, Prince of Songkla University, Hat Yai, Thailand.,Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, USA. kartik.chandran@einstein.yu.edu.,School of Biomedical Sciences, Faculty of Biological Sciences, University of Leeds, LS2 9JT Leeds, United Kingdom.,From the Departments of Medicine and.,Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.,Department of Protein-DNA Interactions, Institute of Biotechnology, Vilnius University, Vilnius, Lithuania.,Department of Chemistry and Biochemistry , University of Wisconsin-Milwaukee , Milwaukee , Wisconsin 53201 , United States.,State Key Laboratory of Biotherapy and Cancer Center, West China Hospital , Sichuan University, and Collaborative Innovation Center of Biotherapy , Chengdu , Sichuan 610041 , China.,Department of Molecular and Cellular Biology, University of California, Davis, Davis, California, United States of America.,the Structural Biology Program and.,Department of Chemistry &Biochemistry and the Harper Cancer Research Institute, University of Notre Dame, Notre Dame, Indiana, USA.,Genome Sciences and Technology Program, University of British Columbia, Vancouver, BC, Canada V6T 1Z3; Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada V6T 1Z3.,Section of Microbiology and MRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, SW7 2DD, UK.,Division of Virology, United States Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD, USA.,UCIBIO, REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal.,Instituto de Química Médica (IQM,CSIC), Juan de la Cierva 3, 28006, Madrid, Spain. empriego@iqm.csic.es.,Departments of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, 11794-5215, United states; Department of Anesthesiology, Stony Brook University, Stony Brook, NY, 11794-8480, United states; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states.,State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China. xfcao@genetics.ac.cn.,Institute for Cell and Molecular Biosciences, University of Newcastle, Newcastle upon Tyne, NE2 4HH, UK.,Department of Biochemistry, University of Oxford, Oxford, OX1 3QU, UK.,From the Department of Biology, Washington University, St. Louis, Missouri 63130 and jjez@wustl.edu.,Applied Mathematics and Statistics, Stony Brook University, Stony Brook, NY, 11794-3600, United states; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states.,FG11 Division of Enteropathogenic Bacteria and Legionella, Robert Koch Institute, Burgstrasse 37, 38855, Wernigerode, Germany.,Graduate School of Science and Technology, Sophia University, 7-1 Kioi-cho, Chiyoda-ku, 102-8554, Tokyo, Japan.,Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.,Program in Chemical Biology, Oregon Health & Science University, Portland, OR 97210, USA; Department of Physiology and Pharmacology, Oregon Health & Science University, Portland, OR 97210, United States. Electronic address: cohenmic@ohsu.edu.,School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.,Department of Virology, School of Public Health, Shandong University, Jinan, China.,Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, CA, USA. erica@scripps.edu.,State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.,Department of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, USA.,Department of Biomolecular Engineering, Graduate School of Science and Technology, Kyoto Institute of Technology, Japan.,CIC bioGUNE, Bizkaia Technology Park, Building 801A, 48170, Derio, Spain.,Department of Chemistry, University of Pittsburgh, 219 Parkman Avenue, Pittsburgh, PA, 15260, USA.,Department of Picobiology, Graduate School of Life Science, University of Hyogo, 3-2-1 Koto, Kamigori-cho, Ako-gun, Hyogo, 678-1297, Japan.,School of Chemistry, Monash University, Clayton, 3800, Australia.,Department of Chemistry, Stony Brook University, Stony Brook, NY, 11794-3400, United states; Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states. Electronic address: iwao.ojima@stonybrook.edu.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China; National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan, Hubei 430070, China.,Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Howard Hughes Medical Institute, Dallas, TX 75390, USA; Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,Howard Hughes Medical Institute, Department of Biochemistry, Brandeis University, Waltham, MA, 02454, USA. dkern@brandeis.edu.,University of Chinese Academy of Sciences, Beijing, 100049, China. xfcao@genetics.ac.cn.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. Dorien.VanLysebetten@UGent.be.,RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan.,Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.,School of Molecular and cellular Biology, Faculty of Biological Sciences, University of Leeds, LS2 9JT Leeds, United Kingdom.,Department of Chemistry, University of California, Davis, Davis, California, United States of America.,Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA.,Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Beijing, 100101, China. xfcao@genetics.ac.cn.,Centre for Plant Sciences, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom.,State Key Laboratory of Genetic Engineering, Collaborative Innovation Centre of Genetics and Development, Department of Biochemistry, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, 200433, China.,Unité de Recherche, Microbes, Evolution, Phylogeny and Infection, Institut Hospitalier Universitaire Méditerranée Infection, Marseille, France.,Ikerbasque, Basque Foundation for Science, Maria Diaz de Haro 13, 48009, Bilbao, Spain.,Illawarra Health and Medical Research Institute, University of Wollongong, Wollongong 2522, Australia. jeffreym@uow.edu.au.,University of Oxford, Nuffield Department of Medicine, NDMRB, Old Road Campus, OX3 7FZ, Oxford, UNITED KINGDOM.,Department of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom; fh111@cam.ac.uk.,Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131, Padova, Italy. massimo.bellanda@unipd.it.,From the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.,Departments of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, NY, 11794-5215, United states.,Human Health Therapeutics Portfolio , National Research Council Canada , 100 Sussex Drive , Ottawa , Ontario , Canada K1A 0R6.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. t.durek@uq.edu.au.,Department of Chemical Research Support, Weizmann Institute of Science, Rehovot, 7610001, Israel.,Dipartimento di Scienze degli Alimenti e del Farmaco, Università degli Studi di Parma, Parco Area delle Scienze 27/A, 43124, Parma, Italy.,Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA. Electronic address: as4005@cumc.columbia.edu.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. d.craik@imb.uq.edu.au.,Division of Biochemistry, Department of Chemistry, Faculty of Science, University of Zagreb, Croatia.,Banting and Best Department of Medical Research and Department of Molecular Genetics, University of Toronto, Terrence Donnelly Centre for Cellular &Biomolecular Research, Toronto, Ontario, Canada.,Department of Organic Chemistry, Faculty of Chemistry, University of Łódź, Tamka 12, PL-91403 Łódź, Poland.,Chair of Proteomics and Bioanalytics, Technical University of Munich, Emil-Erlenmeyer-Forum 5, 85354, Freising, Germany.,IFN-CNR, Dipartimento di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milano, Italy.,College of Physics and Information Science, Synergetic Innovation Center for Quantum Effects and Applications, Hunan Normal University, Changsha, 410081, Hunan, China.,Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory , Stanford University , Menlo Park , California 94025 , United States.,Biological Pharmacological Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-1, Murasaki-cho, Takatsuki, Osaka, 569-1125, Japan.,EN-FIST Center of Excellence, 1000 Ljubljana, Slovenia.,Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address: gamarasinghe@wustl.edu.,College of Pharmacy, Chung-Ang University, Seoul 06974, Republic of Korea.,the Department of Agronomy and Horticulture, University of Nebraska, Lincoln, Nebraska 68588.,Glycosciences Laboratory, Department of Medicine, Imperial College London, London, United Kingdom.,Department of Organic Chemistry II, Faculty of Science & Technology, University of the Basque Country, 48940, Leioa, Bizkaia, Spain.,Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan. nishino@sanken.osaka-u.ac.jp.,Biochemistry, University of Utah, Salt Lake City, Utah 84112.,Department of Biochemistry, University of Cambridge, CB2 1GA Cambridge, United Kingdom.,From the Institute for Protein Design.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China.,New College of Florida, Sarasota, FL 34243, USA.,Laboratorio de Fisicoquímica Biológica, Instituto de Química Biológica, Facultad de Ciencias, Universidad de la República, Igua 4425, 11400, Montevideo, Uruguay.,Institute for Glycomics, Gold Coast Campus, Griffith University, Queensland, 4222, Australia.,Department of Oncological Sciences, School of Medicine, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT 84112-5550, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815-6789, USA.,Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA; Department of Medicine, Washington University School of Medicine, St. Louis, MO 63110, USA; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO 63110, USA; The Andrew M. and Jane M. Bursky Center for Human Immunology and Immunotherapy Programs, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address: diamond@wusm.wustl.edu.,Cardiovascular Research Institute, University of California at San Francisco, San Francisco, CA, USA. xiaokun.shu@ucsf.edu.,Pharmaceutical Frontier Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-13-2, Fukuura, Kanazawa-Ku, Yokohama, Kanagawa, 236-0004, Japan.,Department of Chemistry, University of Pennsylvania, Philadelphia, PA, USA.,Department of Chemistry "Ugo Schiff", University of Florence, Via della Lastruccia 3, 50019, Sesto Fiorentino (FI), Italy.,Department of Chemistry, Graduate School of Science, Tohoku University, Aramaki, Aoba-ku, Sendai, Miyagi, 980-8578, Japan.,Department of Biochemistry and Biophysics, University of California at San Francisco, San Francisco, CA, USA.,Genome Sciences and Technology Program, University of British Columbia, Vancouver, BC, Canada V6T 1Z3; Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada V6T 1Z3; Department of Chemistry, University of British Columbia, Vancouver, BC, Canada V6T 1Z1; Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada V6T 1Z4. Electronic address: mcintosh@chem.ubc.ca.,Illawarra Health and Medical Research Institute, University of Wollongong, Wollongong 2522, Australia. djadams@uow.edu.au.,From the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada and.,Cryo-Electron Microscopy, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands.,School of Chemistry, Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. thomas.dash@imb.uq.edu.au.,Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131, Padova, Italy.,CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.,Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA.,Department of Protein Structure, Function and Design, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka, Japan.,National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, 100101, China. xiangxi@ibp.ac.cn hrliu@hunnu.edu.cn xzzhang@ibp.ac.cn wangjz@nicpbp.org.cn raozh@tsinghua.edu.cn.,CNRS UMR 9004, Institut de Recherche en Infectiologie de Montpellier, Université de Montpellier, Montpellier, France.,Illawarra Health and Medical Research Institute, University of Wollongong, Wollongong 2522, Australia. rfinolu@uow.edu.au.,Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden. hogbom@dbb.su.se.,Department of Chemistry , Fresno State University , 2555 East San Ramon Avenue, MS SB70 , Fresno , California 93740 , United States.,Department of Pathology, University of Texas Medical Branch, Galveston, TX, USA.,Sinovac Biotech Co., Ltd., Beijing, 100085, China.,Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands. p.gros@uu.nl.,Michael Smith Laboratories, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.,Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.,York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York, YO10 5DD, UK.,Faculty of Chemistry and Chemical Technology, University of Ljubljana, 1000 Ljubljana, Slovenia.,Department of Pharmacology and Chemical Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.,Department of Chemistry and Biochemistry, University of Bern, Bern, Switzerland. christoph.vonballmoos@dcb.unibe.ch.,Kaplan Medical Center, Rehovot, affiliated to the School of Medicine, Hebrew University, Jerusalem, 7661041, Israel. Oren.Zimhony@weizmann.ac.il.,Slovenian NMR Center, National Institute of Chemistry, 1000 Ljubljana, Slovenia.,Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan. amtanok@mail.ecc.u-tokyo.ac.jp.,Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA.,Rega Institute for Medical Research, KU Leuven, Herestraat 49, B-3000, Leuven, Belgium.,From the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1, Canada and mkimber@uoguelph.ca.,Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.,Department of Nutrition, Food Sciences and Gastronomy, Faculty of Pharmacy and Food Sciences and Institute of Biomedicine (IBUB), University of Barcelona, Avda. Prat de la Riba 171, Santa Coloma de Gramenet, Spain. fjluque@ub.edu.,Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow 117997, Russia; Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Oblast 141700, Russia.,Department of Structural Biology, Weizmann Institute of Science, Rehovot, 7610001, Israel. ron.diskin@weizmann.ac.il.,Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma (J.M.B., M.L.W., A.M.R., A.A.P.) and School of Biological Sciences, University of Auckland, Auckland, New Zealand (D.L.H.) augen-pioszak@ouhsc.edu.,Department of Chemistry, Yale University, New Haven, CT 06520, USA.,School of Biology, Faculty of Biology Medicine and Health, Michael Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK. robert.ford@manchester.ac.uk.,MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, UK. ccharent@mrc-lmb.cam.ac.uk mwilkin@mrc-lmb.cam.ac.uk kn@mrc-lmb.cam.ac.uk.,Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA, USA.,School of Life Sciences, Anhui University, 111 Jiulong Road, Hefei, Anhui 230601, People's Republic of China.,From the Department of Biology, Washington University, St. Louis, Missouri 63130 and.,Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.,Department of Chemistry and Konstanz Research School Chemical Biology, University of Konstanz, Universitätsstrasse 10, 7857, Konstanz, Germany.,Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC, Canada V6T 1Z3.,From the Departments of Medicine and natasha.nesbitt@stonybrook.edu.,Graduate School of Comprehensive Rehabilitation, College of Health and Human Sciences, Osaka Prefecture University, Habikino, Japan.,National Institutes for Food and Drug Control, No. 2, Tiantanxili, Beijing, 100050, China. xiangxi@ibp.ac.cn hrliu@hunnu.edu.cn xzzhang@ibp.ac.cn wangjz@nicpbp.org.cn raozh@tsinghua.edu.cn.,CRBM, "Equipe Labellisée Ligue Contre le Cancer", Univ Montpellier, CNRS, 34000 Montpellier, France. Electronic address: serge.roche@crbm.cnrs.fr.,School of Life Sciences, University of Dundee, Dundee, United Kingdom.,From the Departments of Chemistry and.,Dipartimento di Scienze Matematiche, Fisiche e Informatiche, Università degli Studi di Parma, Parco Area delle Scienze 7/A, 43124, Parma, Italy. cristiano.viappiani@unipr.it.,University of Oxford, Structural Genomics Consortium, NDMRB, Roosevelt Drive, OX3 7FZ, Oxford, UNITED KINGDOM.,Swiss Light Source, Paul Scherrer Institute, Villigen, Switzerland. meitian.wang@psi.ch.,Institute for Molecular Bioscience, The University of Queensland, Brisbane 4072, Australia. justine.hill1@gmail.com.,Alberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada.,Institut de Biologie Structurale (IBS), Univ. Grenoble Alpes, CEA, CNRS, 38044, Grenoble, France. thibaut.crepin@ibs.fr.,Chemistry and Physics, State University of New York at Stony Brook, Stony Brook, New York 11794-8151, jin.wang.1@stonybrook.edu.,State Key Laboratory of Genetic Engineering, Collaborative Innovation Centre of Genetics and Development, Department of Biochemistry, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, 200433, China. majb@fudan.edu.cn.,State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.,School of Pharmacy, Sungkyunkwan University, Suwon, Republic of Korea.,Department CIBIO, University of Trento, via Sommarive 9, 38123, Povo, Italy.,Institut für Biologie, Strukturbiologie/Biochemie, Humboldt-Universität zu Berlin, D-10099 Berlin, Germany.,Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.,Department of Structural Biology , St. Jude Children's Research Hospital , Memphis , Tennessee 38105 , United States.,Magnetic Resonance Center (CERM), University of Florence, Via L. Sacconi 6, 50019, Sesto Fiorentino (FI), Italy.,Division of General and Inorganic Chemistry, Department of Chemistry, Faculty of Science, University of Zagreb, Croatia.,Department of Chemistry, Stony Brook University, Stony Brook, NY, 11794-3400, United states.,Department of Pharmacology and Chemical Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA. chengzh@pitt.edu.,Chemical Research Laboratories, Central Pharmaceutical Research Institute, Japan Tobacco Inc., 1-1, Murasaki-cho, Takatsuki, Osaka, 569-1125, Japan.,Integrated Structural Biology Grenoble (ISBG) - UMS 3518 (CNRS-CEA-UJF-EMBL), 38044, Grenoble, France.,Department of Chemistry, Washington University, St. Louis, MO 63130, USA.,Laboratory of Structural Biology, School of Medicine, Tsinghua University, Beijing, 100084, China.,Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.,ISGlobal, Hospital-Clinic-Universitat de Barcelona, Barcelona, Spain.,Cardiovascular Research Institute, University of California at San Francisco, San Francisco, CA, USA.,Therapeutic Target Discovery Branch, Division of Precision Medicine and Cancer Informatics, Research Institute, National Cancer Center, Goyang-si, Gyeonggi-do 10408, Republic of Korea.,Centre National de la Recherche Scientifique, Campus Joseph Aiguier, Marseille, France.,Centre for Bacterial Cell Biology, Institute for Cell and Molecular Biosciences, University of Newcastle, Newcastle upon Tyne, NE2 4AX, UK.,Faculty of Pharmacy and Biochemistry, University of Zagreb, Ante Kovačića 1, Zagreb, Croatia.,Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai, 201210, China.,Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, 565-0871, Osaka, Japan. nishino@sanken.osaka-u.ac.jp.,Université François Rabelais de Tours, UMR1282 Infectiologie et Santé Publique, F-37000, Tours, France.,Biotechnical faculty, University of Ljubljana, Slovenia.,Molecular Modeling Section (MMS), Department of Pharmaceutical and Pharmacological Sciences, University of Padova, via Marzolo 5, Padova, Italy.,Department of Plant Pathology, University of California, Davis, Davis, California, United States of America.,From the Departments of Chemistry and koehntop@chem.utah.edu.,Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA; Integrated Program in Cellular, Molecular and Biomedical Studies, Columbia University, New York, NY 10032, USA.,National Institute of Chemistry, Ljubljana, Slovenia.,Department of Biochemistry & Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA; Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA; Institute for Translational Science, University of Texas Medical Branch, Galveston, TX 77555, USA; Institute for Human Infections and Immunity, University of Texas Medical Branch, Galveston, TX 77555, USA.,Department of Biochemistry and Microbiology , University of Victoria , P.O. Box 3055 STN CSC, Victoria , British Columbia , Canada V8P 3P6.,Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw 02-106, Poland.,Orphagen Pharmaceuticals, 11558 Sorrento Valley Road, Suite 4, San Diego, California, 92121, USA.,Molecular Physiology and Biological Physics, University of Virginia School of Medicine, Charlottesville, VA, 22908, USA. jochen_zimmer@virginia.edu.,Center for Biomolecular Magnetic Resonance (BMRZ), Institute for Organic Chemistry and Chemical Biology, Johann Wolfgang Goethe University, Max-von-Laue-Straße 7, 60438, Frankfurt am Main, Germany.,Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, USA. erica@scripps.edu.,Department of Biochemistry & Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.,University of Chinese Academy of Sciences, Beijing, 100049, China.,Ramaciotti Centre for Electron Microscopy, Monash University, Clayton, 3800, Australia.,Institute for Pharmaceutical Chemistry, Johann Wolfgang Goethe University, Max-von-Laue-Straße 9, 60438, Frankfurt am Main, Germany.,Institute for Neurodegenerative Diseases, University of California at San Francisco, San Francisco, CA, USA. william.degrado@ucsf.edu.,Department of Cancer Biology and Cell Biology, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, 02215, USA.,Max-Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470, Mülheim an der Ruhr, Germany.,Howard Hughes Medical Institute, Dallas, TX 75390, USA.,Centre de RMN à Très Hauts Champs, Institut des Sciences Analytiques (UMR 5280 - CNRS, ENS Lyon, UCB Lyon 1), Université de Lyon, 5 rue de la Doua, 69100, Villeurbanne, France.,Cardiovascular Research Institute, University of California at San Francisco, San Francisco, CA, USA. william.degrado@ucsf.edu.,Institute for Cell and Molecular Biosciences, University of Newcastle, Newcastle upon Tyne, NE2 4HH, UK. r.lewis@ncl.ac.uk.,Institute for Inorganic Chemistry, Goethe University Frankfurt, Frankfurt am Main, Germany.,Division of Infectious Diseases, University of Cincinnati College of Medicine, Cincinnati, Ohio, USA.,Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea.,Department of Protein Structure, Function and Design, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka, Japan. Electronic address: ueda@phar.kyushu-u.ac.jp.,Department of Chemistry and Biochemistry, University of Bern, Bern, Switzerland.,College of Life Science and Technology, Huazhong Agricultural University, Wuhan, Hubei 430070, China; State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, Hubei 430070, China.,Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institut, 5232, Villigen, Switzerland.,Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA; Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA. Electronic address: vincent.tagliabracci@utsouthwestern.edu.,Center for Fiber and Textile Science, Kyoto Institute of Technology, Japan.,Institute of Chemical Biology and Drug Discovery, Stony Brook University, Stony Brook, NY, 11794-3400, United states.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Aminoglycoside phosphotransferase
A
354Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)Mutation(s): 0 
Find proteins for A0QP47 (Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Go to UniProtKB:  A0QP47
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
ACT
Query on ACT

Download SDF File 
Download CCD File 
A
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
JFN
Query on JFN

Download SDF File 
Download CCD File 
A
(2R)-1-methoxypropan-2-amine
C4 H11 N O
NXMXETCTWNXSFG-SCSAIBSYSA-N
 Ligand Interaction
BEZ
Query on BEZ

Download SDF File 
Download CCD File 
A
BENZOIC ACID
C7 H6 O2
WPYMKLBDIGXBTP-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.168 
  • R-Value Work: 0.149 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 72.010α = 90.00
b = 70.050β = 95.12
c = 60.720γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXphasing
PHENIXrefinement
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Natural Sciences and Engineering Research Council (Canada)Canada04045-2015

Revision History 

  • Version 1.0: 2018-10-17
    Type: Initial release
  • Version 1.1: 2019-05-01
    Type: Data collection, Database references, Structure summary