6ED2

Faecalibacterium prausnitzii beta-glucuronidase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.172 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure, function, and inhibition of drug reactivating human gut microbial beta-glucuronidases.

Biernat, K.A.Pellock, S.J.Bhatt, A.P.Bivins, M.M.Walton, W.G.Tran, B.N.T.Wei, L.Snider, M.C.Cesmat, A.P.Tripathy, A.Erie, D.A.Redinbo, M.R.

(2019) Sci Rep 9: 825-825


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glycosyl hydrolase family 2, TIM barrel domain protein
A
631Faecalibacterium prausnitzii A2-165Mutation(s): 0 
Find proteins for C7H4D2 (Faecalibacterium prausnitzii A2-165)
Go to UniProtKB:  C7H4D2
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMT
Query on FMT

Download SDF File 
Download CCD File 
A
FORMIC ACID
C H2 O2
BDAGIHXWWSANSR-UHFFFAOYSA-N
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.172 
  • Space Group: P 64 2 2
Unit Cell:
Length (Å)Angle (°)
a = 145.232α = 90.00
b = 145.232β = 90.00
c = 233.897γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
PHENIXphasing
XDSdata scaling
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer InstituteUnited States--

Revision History 

  • Version 1.0: 2019-02-13
    Type: Initial release