6ECG

Citrobacter freundii tyrosine phenol-lyase F448A mutant complexed with L-methionine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.183 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal Structures of Wild-Type and F448A Mutant Citrobacter freundii Tyrosine Phenol-Lyase Complexed with a Substrate and Inhibitors: Implications for the Reaction Mechanism.

Phillips, R.S.Craig, S.

(2018) Biochemistry 57: 6166-6179


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Tyrosine phenol-lyase
A
455Citrobacter freundiiMutation(s): 1 
Gene Names: tpl
EC: 4.1.99.2
Find proteins for P31013 (Citrobacter freundii)
Go to UniProtKB:  P31013
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Tyrosine phenol-lyase
B
455Citrobacter freundiiMutation(s): 1 
Gene Names: tpl
EC: 4.1.99.2
Find proteins for P31013 (Citrobacter freundii)
Go to UniProtKB:  P31013
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
K
Query on K

Download SDF File 
Download CCD File 
A
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
 Ligand Interaction
P33
Query on P33

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Download CCD File 
A
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
HEPTAETHYLENE GLYCOL, PEG330
C14 H30 O8
XPJRQAIZZQMSCM-UHFFFAOYSA-N
 Ligand Interaction
PM9
Query on PM9

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Download CCD File 
A
(2E)-2-{[(Z)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4(1H)-YLIDENE}METHYL]IMINO}-4-(METHYLSULFANYL)BUTANOIC ACID
C13 H19 N2 O7 P S
UNHRYMFMFMQCNK-JNVWRRHBSA-N
 Ligand Interaction
PGE
Query on PGE

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Download CCD File 
A
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
LLP
Query on LLP
B
L-PEPTIDE LINKINGC14 H22 N3 O7 PLYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.183 
  • Space Group: P 2 21 21
Unit Cell:
Length (Å)Angle (°)
a = 59.610α = 90.00
b = 132.850β = 90.00
c = 144.270γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-08-07 
  • Released Date: 2018-10-10 
  • Deposition Author(s): Phillips, R.S.

Revision History 

  • Version 1.0: 2018-10-10
    Type: Initial release
  • Version 1.1: 2018-11-14
    Type: Data collection, Database references, Structure summary