6DZX

Crystal structure of the N. meningitides methionine-binding protein in its D-methionine bound conformation.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.678 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.176 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis for substrate stereo-specificity of the Neisseria meningitides methionine-binding protein MetQ

Nguyen, P.T.Lai, J.Y.Kaiser, J.T.Rees, D.R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lipoprotein
A, B, C, D, E, F
247Neisseria meningitidis alpha153Mutation(s): 0 
Gene Names: sfbA
Find proteins for C6S9R8 (Neisseria meningitidis alpha153)
Go to UniProtKB:  C6S9R8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MED
Query on MED

Download SDF File 
Download CCD File 
A, B, C, D, E, F
D-METHIONINE
C5 H11 N O2 S
FFEARJCKVFRZRR-SCSAIBSYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.678 Å
  • R-Value Free: 0.201 
  • R-Value Work: 0.176 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 79.663α = 114.83
b = 87.933β = 104.12
c = 91.639γ = 105.39
Software Package:
Software NamePurpose
XDSdata reduction
PHASERphasing
PHENIXrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical InstituteUnited States--

Revision History 

  • Version 1.0: 2019-07-10
    Type: Initial release