6DZX | pdb_00006dzx

Crystal structure of the N. meningitides methionine-binding protein in its D-methionine bound conformation.

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Fd6dzxf_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Neisseria meningitidis alpha153 ) [TaxId: 663926 ], SCOPe (2.08)
Ed6dzxe_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Neisseria meningitidis alpha153 ) [TaxId: 663926 ], SCOPe (2.08)
Dd6dzxd_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Neisseria meningitidis alpha153 ) [TaxId: 663926 ], SCOPe (2.08)
Cd6dzxc_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Neisseria meningitidis alpha153 ) [TaxId: 663926 ], SCOPe (2.08)
Bd6dzxb_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Neisseria meningitidis alpha153 ) [TaxId: 663926 ], SCOPe (2.08)
Ad6dzxa_ Alpha and beta proteins (a/b) Periplasmic binding protein-like II Periplasmic binding protein-like II automated matches automated matches (Neisseria meningitidis alpha153 ) [TaxId: 663926 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyType 2 solute binding protein-like 8097440 3000083 SCOP2B (2022-06-29)
ESCOP2 FamilyPhosphate binding protein-like 8097439 4000229 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyType 2 solute binding protein-like 8097440 3000083 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyType 2 solute binding protein-like 8097440 3000083 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyType 2 solute binding protein-like 8097440 3000083 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyType 2 solute binding protein-like 8097440 3000083 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyType 2 solute binding protein-like 8097440 3000083 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FAcetyltransf_3e6dzxF1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Acetyltransf_3ECOD (develop294)
ESerum_albumine6dzxE1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Serum_albuminECOD (develop294)
DAcetyltransf_3e6dzxD1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Acetyltransf_3ECOD (develop294)
CAcetyltransf_3e6dzxC1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Acetyltransf_3ECOD (develop294)
BAcetyltransf_3e6dzxB1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Acetyltransf_3ECOD (develop294)
AAcetyltransf_3e6dzxA1 A: alpha bundlesX: Ten stranded beta/alpha barrelH: Ten stranded beta/alpha barrelT: Ten stranded beta/alpha barrelF: Acetyltransf_3ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (utative)
E3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (utative)
D3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (utative)
C3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (utative)
B3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (utative)
A3.40.190.10 Alpha Beta 3-Layer(aba) Sandwich D-Maltodextrin-Binding Protein domain 2CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Lipoprotein- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR004872Lipoprotein NlpA familyFamily