6DX5

Crystal structure of the viral OTU domain protease from Farallon virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.224 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.163 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Probing the impact of nairovirus genomic diversity on viral ovarian tumor domain protease (vOTU) structure and deubiquitinase activity.

Dzimianski, J.V.Beldon, B.S.Daczkowski, C.M.Goodwin, O.Y.Scholte, F.E.M.Bergeron, E.Pegan, S.D.

(2019) PLoS Pathog. 15: e1007515-e1007515


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RNA-dependent RNA polymerase
B, A
203Farallon virusMutation(s): 0 
Find proteins for A0A191KW96 (Farallon virus)
Go to UniProtKB:  A0A191KW96
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
DTT
Query on DTT

Download SDF File 
Download CCD File 
A, B
2,3-DIHYDROXY-1,4-DITHIOBUTANE
1,4-DITHIOTHREITOL
C4 H10 O2 S2
VHJLVAABSRFDPM-IMJSIDKUSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.224 Å
  • R-Value Free: 0.203 
  • R-Value Work: 0.163 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 70.276α = 90.00
b = 70.276β = 90.00
c = 176.258γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
PHENIXphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesR01AI109008

Revision History 

  • Version 1.0: 2018-12-19
    Type: Initial release
  • Version 1.1: 2019-01-23
    Type: Data collection, Database references