6DWX

Crystal structure of SeMet phased viral OTU domain protease from Qalyub virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.395 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.174 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Probing the impact of nairovirus genomic diversity on viral ovarian tumor domain protease (vOTU) structure and deubiquitinase activity.

Dzimianski, J.V.Beldon, B.S.Daczkowski, C.M.Goodwin, O.Y.Scholte, F.E.M.Bergeron, E.Pegan, S.D.

(2019) PLoS Pathog. 15: e1007515-e1007515


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
RNA-dependent RNA polymerase
A, B, C
174Qualyub virusMutation(s): 0 
Find proteins for A0A191KWB3 (Qualyub virus)
Go to UniProtKB:  A0A191KWB3
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.395 Å
  • R-Value Free: 0.195 
  • R-Value Work: 0.174 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 110.587α = 90.00
b = 110.587β = 90.00
c = 106.211γ = 120.00
Software Package:
Software NamePurpose
PHENIXphasing
HKL-2000data reduction
PHENIXrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesR01AI109008

Revision History 

  • Version 1.0: 2018-12-19
    Type: Initial release
  • Version 1.1: 2019-01-23
    Type: Data collection, Database references