6DU5

Crystal structure of hMettl16 catalytic domain in complex with MAT2A 3'UTR hairpin 6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.006 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.248 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural Basis for Regulation of METTL16, an S-Adenosylmethionine Homeostasis Factor.

Doxtader, K.A.Wang, P.Scarborough, A.M.Seo, D.Conrad, N.K.Nam, Y.

(2018) Mol. Cell 71: 1001-1011.e4


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase
A
313Homo sapiensMutation(s): 0 
Gene Names: METTL16 (METT10D)
EC: 2.1.1.346
Find proteins for Q86W50 (Homo sapiens)
Go to Gene View: METTL16
Go to UniProtKB:  Q86W50
Entity ID: 2
MoleculeChainsLengthOrganism
hp6-RNA (25-MER)B27Homo sapiens
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.006 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.248 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 134.918α = 90.00
b = 134.918β = 90.00
c = 76.208γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data scaling
PHENIXphasing
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
United States--

Revision History 

  • Version 1.0: 2018-09-26
    Type: Initial release
  • Version 1.1: 2018-10-03
    Type: Data collection, Database references